Pairwise Alignments

Query, 391 a.a., ROK family protein from Bifidobacterium breve UCC2003

Subject, 406 a.a., ROK family transcriptional regulator from Serratia liquefaciens MT49

 Score =  115 bits (288), Expect = 2e-30
 Identities = 92/374 (24%), Positives = 174/374 (46%), Gaps = 35/374 (9%)

Query: 14  NRRLLFRLLFPDRQLSRADLCKETGLSRATATDVTGEMIDDGLLRELGSRKRDGRGKPGT 73
           N   ++RL+     +SR  + + + L+ A+ T +T ++++ GL++E+  +   G G+   
Sbjct: 19  NGAAVYRLIDQQGPISRIQIAELSQLAPASVTKITRQLLERGLIKEVDQQASTG-GRRAI 77

Query: 74  LLAIDTDVLRLICIDLSRPYVITGAVMDLRARIVERRERVLDDGDRVDLDDVL-SLVGQM 132
            +  +T     + + L R +  T  + D+  + +      L +  +  L++ L + + Q 
Sbjct: 78  SIVSETRHFHTVAVRLGR-HDATITLYDMSGKSLGEEHYPLPERTQETLENALFTAIAQF 136

Query: 133 I---RLAGSGLVGIGVAVPGVVSGA-GRVISSSNLGWDDVELRDMLEGEFSLPARVDNDA 188
           I   +     L+ I V +PG+V  A G V    ++   +  L D L+  F++ + V +D 
Sbjct: 137 IEDYQRKLRELIAIAVILPGLVDPALGVVRYMPHISVSNWPLVDNLQQRFNVTSFVGHDI 196

Query: 189 NAALLADHFLGHGNP--NCLLVQITRGIGASVLLNDEFVDGDDHAAGEIGHVVIDPNGPA 246
            +  LA+H+ G      + +LV++ RG GA +++N +   G++   GEIGH+ IDP G  
Sbjct: 197 RSLALAEHYFGATRDCEDSILVRLHRGTGAGIIVNGQIFLGNNGNVGEIGHIQIDPLGER 256

Query: 247 CTCGKRGCLETYVSAIALRDRIRR---------------------DPNRRADILA----- 280
           C CG  GCLET  +  A+  R+R+                         R D+LA     
Sbjct: 257 CHCGNFGCLETVAANAAIEHRVRQLLTQGYPSKLTLDDCSISAICKAANRGDLLASEVIE 316

Query: 281 EAGARLGEALAMPVSLLNLHDIAVYGPPDIVGETLLNACDETVNSLSRNDYQSGMRVRRC 340
             G  LG+A+A+ ++L N   + + G      + LL A    +N+    D++  + V   
Sbjct: 317 HVGRYLGKAVAIAINLFNPQKVVIAGEITEAEKVLLPAIQSCINTQVLKDFRKNLPVVTS 376

Query: 341 ELGDDATLRGQAVS 354
           EL   + +   A++
Sbjct: 377 ELNHRSAIGAFALA 390