Pairwise Alignments

Query, 391 a.a., ROK family protein from Bifidobacterium breve UCC2003

Subject, 406 a.a., N-acetylglucosamine-inducible nag divergent operon transcriptional repressor from Escherichia coli BL21

 Score =  116 bits (291), Expect = 1e-30
 Identities = 90/382 (23%), Positives = 178/382 (46%), Gaps = 36/382 (9%)

Query: 14  NRRLLFRLLFPDRQLSRADLCKETGLSRATATDVTGEMIDDGLLRELGSRKRDGRGKPGT 73
           N   ++RL+     +SR  + +++ L+ A+ T +T ++I+ GL++E+  +   G G+   
Sbjct: 19  NSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTG-GRRAI 77

Query: 74  LLAIDTDVLRLICIDLSRPYVITGAVMDLRARIVERRERVLDDGDRVDLDD-VLSLVGQM 132
            +  +T     I + L R +  T  + DL ++++      L +  +  L+  +L+ + Q 
Sbjct: 78  SIVTETRNFHAIGVRLGR-HDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQF 136

Query: 133 I---RLAGSGLVGIGVAVPGVVS-GAGRVISSSNLGWDDVELRDMLEGEFSLPARVDNDA 188
           I   +     L+ I V +PG+V   +G++    ++  ++  L + LE  F +   V +D 
Sbjct: 137 IDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDI 196

Query: 189 NAALLADHFLGHGNP--NCLLVQITRGIGASVLLNDEFVDGDDHAAGEIGHVVIDPNGPA 246
            +  LA+H+ G      + +LV++ RG GA ++ N     G +   GEIGH+ ++P G  
Sbjct: 197 RSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGER 256

Query: 247 CTCGKRGCLETYVSAIALRDRI--------------------------RRDPNRRADILA 280
           C CG  GCLET  +  A+  R+                           +  +  ++++ 
Sbjct: 257 CHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIE 316

Query: 281 EAGARLGEALAMPVSLLNLHDIAVYGPPDIVGETLLNACDETVNSLSRNDYQSGMRVRRC 340
             G  LG+ +A+ ++L N   I + G      + LL A +  +N+ +   +++ + V R 
Sbjct: 317 YVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRS 376

Query: 341 ELGDDATLRGQAVSVLREIVGG 362
           EL D  +  G    V R ++ G
Sbjct: 377 EL-DHRSAIGAFALVKRAMLNG 397