Pairwise Alignments

Query, 391 a.a., ROK family protein from Bifidobacterium breve UCC2003

Subject, 408 a.a., ROK family transcriptional regulator from Agrobacterium fabrum C58

 Score =  127 bits (318), Expect = 7e-34
 Identities = 108/403 (26%), Positives = 181/403 (44%), Gaps = 34/403 (8%)

Query: 6   NPSDARANNRRLLFRLLFPDRQLSRADLCKETGLSRATATDVTGEMIDDGLLRELGSRKR 65
           NP  +R +NRR++  L+     L RA + K T L+     ++  E++ + LL+ELG R+R
Sbjct: 16  NPERSREHNRRVVLDLVRRHGSLGRAQIAKITHLTAQAVANIVDELVGEELLKELG-RRR 74

Query: 66  DGRGKPGTLLAIDTDVLRLICIDLSRPYVITGAVMDLRARIVERRERVLDDGD-RVDLDD 124
            GRG+P    A++ D    I ++++  +++T   +DL   +   R   L D      L  
Sbjct: 75  TGRGQPPIQFAVNPDGGATIGVEIAADHMVTVG-LDLAGVLRTHRVTPLKDTTPEAILKT 133

Query: 125 VLSLVGQMIRLAGSGLVGIGVAVPGV--VSGAGRVISSSNLGWDDVELRDMLEGEFSLPA 182
             +    + +  G  L+G GV +PG   + G   V  ++  GW  ++ R ML        
Sbjct: 134 FAAEHAAVAKNVGCRLLGTGVVMPGPFEIDGMTSVGPTTLSGWVGIDARQMLSEACGQQV 193

Query: 183 RVDNDANAALLADHFLGHGN--PNCLLVQITRGIGASVLLNDEFVDGDDHAAGEIGHVVI 240
            V+NDA AA + +   G G   PN  ++    GIG  ++ +     G    AGEIGHV +
Sbjct: 194 VVENDATAAAVGERLFGAGLAIPNFCMIYFGVGIGLGIIQDGAPYRGAFGNAGEIGHVTV 253

Query: 241 DPNGPAC-TCGKRGCLETYVSAIALRDRIRRDPNRRADI-----------------LAEA 282
            P G  C +CG+RGCLE Y SA  L++++R       ++                 + EA
Sbjct: 254 SPKGRLCPSCGQRGCLEAYASAYVLKEKLRHVGVADTELDDLEALFKAGHPVVMEWIDEA 313

Query: 283 GARLGEALAMPVSLLNLHDIAVYGP-PDIVGETLLNACDETVNSLSRNDYQSGMRVRRCE 341
            A L   +AM  ++L+   + + G  P+ +   ++        S++    +   RV   +
Sbjct: 314 AAHLAPMVAMLENILDPQTVILGGALPEAIISEIIQRMGHLPTSVASRRQRELPRVMHGK 373

Query: 342 LGDDATLRGQAVSVLREIVGGRGLYAATTQVDKSCLEAAQLDG 384
            G      G A   L +IV        T +++ S   A Q+ G
Sbjct: 374 SGQLTAALGAAALPLFDIV--------TPKLETSSGAATQVPG 408