Pairwise Alignments

Query, 481 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Bifidobacterium breve UCC2003

Subject, 456 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Pseudomonas simiae WCS417

 Score =  238 bits (608), Expect = 2e-67
 Identities = 171/471 (36%), Positives = 248/471 (52%), Gaps = 39/471 (8%)

Query: 4   MSVEEIAKAVDGRLVAGDGSAIEATETVTDSRQAGSGAVFVAIKGERVDGHDFVDKVADQ 63
           M   E+ +A+  R+++ D S    +    DSR    G +FVA+ G R DGHD++++VA +
Sbjct: 5   MKFSELTQALSARVLSSDCSFDGVS---IDSRNIKPGQLFVALTGPRFDGHDYLNEVAAK 61

Query: 64  GAAAAIVDHEVACTTMPQIVVEDTVAALGLLAKHNIDRRRQLPGAFD--LIGLTGSVGKT 121
           GA  A+V   VA +T+PQ++V DT  ALG L   N         AF   +  +TGS GKT
Sbjct: 62  GAVGALVQRAVADSTLPQLLVADTRLALGQLGALN-------RAAFTNPVAAITGSSGKT 114

Query: 122 TTKDLLSALLSTLGPTVAPIGSFNNEIGLPLTALRVNADTRFFVAEMGANHIGEIARLTR 181
           T K+LL+ +L T GP  A  G+ NN+ G PLT L +  +    V E+GA+ +GEIA    
Sbjct: 115 TVKELLAGVLRTRGPVHATRGNLNNDFGAPLTLLELAPEHTAAVIELGASRVGEIAYTVA 174

Query: 182 IAPPNTVIVLRVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDDYVVPMAQLAS 241
           +  P+ V++   G AH+GEFG  E+I +AK EI++GL   G AVLN DD         A+
Sbjct: 175 LTKPHVVVINNAGTAHVGEFGGPEKIVEAKGEILEGLDASGIAVLNLDDKAFETWRVRAA 234

Query: 242 G-DVLWFGQGHTHDSEVHADHIAADAADHAEFTMTDAHGEQVAVHLGIPGRHNVMNALAA 300
           G  VL F   +   ++ HA +I  DA     FT+    G +  V L + G HNV NALAA
Sbjct: 235 GRKVLTFAVLNA-AADFHASNITVDARGCPSFTLHTPQGNE-HVQLNLLGNHNVANALAA 292

Query: 301 ATVALRYGMPLTAIAQTLAAQHTISPHRMALSTVSRQGASFELIDDSFNANPDSMKAGLD 360
           A  A   G+ L  IA  L A   +    +A    +       +IDD++NAN  S+ A +D
Sbjct: 293 AAAAYALGVSLFGIATGLGAVQPVKGRTVAQLATN----GMRVIDDTYNANQSSICAAID 348

Query: 361 GLRAWNANDGRQPFRVALLGAMLELGADERELHASVGEYAAGLGLDAIITVGSPSDAHLN 420
            L+++   +GR   +V +LG + ELG    + H  VG YAAG  +DA+  VG P+ AH  
Sbjct: 349 LLKSF---EGR---KVLVLGDIAELGDWAEQSHREVGAYAAG-KVDALYAVG-PNMAH-- 398

Query: 421 VLAESLAEGATRGRAASVDCVQTIDEAERIVLDLAKNHTDTVVLLKGSHAS 471
             A S+     R      + +Q +  AE        +   T +L+KGS ++
Sbjct: 399 --AVSVFGPGARHFVTQAELIQALTAAE--------HDKHTTILIKGSRSA 439