Pairwise Alignments

Query, 309 a.a., site-specific tyrosine recombinase XerD from Bifidobacterium breve UCC2003

Subject, 298 a.a., site-specific tyrosine recombinase from Escherichia coli BL21

 Score =  190 bits (483), Expect = 3e-53
 Identities = 114/299 (38%), Positives = 173/299 (57%), Gaps = 12/299 (4%)

Query: 11  EQFLVHIGIERGLAKATVSAYESDLNKYVAWLQTHGITKPDDIAKQDVEDYIAALDADGE 70
           E++L ++ +ER L+  T+  Y+  L   + +   +G+          V ++       G 
Sbjct: 9   ERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDAAMVRNFAVRSRRKGL 68

Query: 71  SARSKARRLASIHEFHRFALAQHAVLADVAASVKAPKGASVLPDVLSVDEVSRLLDAAAV 130
            A S A RL+++  F  + ++Q+ + A+ A  V APK    LP  + VD+++RLLD    
Sbjct: 69  GAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI- 127

Query: 131 GGSTDPVVLRDKALLEFMYATGCRVSEAVGTNLDDIDLEEKVVRLMGKGSKQRLVPLGSY 190
               DP+ +RD+A+LE MY  G R+SE VG ++  +DLE   V +MGKGSK+R +P+G  
Sbjct: 128 ---NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRN 184

Query: 191 ARNSVVAYLNAGRGELERRSTAKVPERRALFLNKRGKRISRQSVWEIVKTAGERAGITKP 250
           A    VA++      L+ R      E  ALFL+K GKRIS ++V +     G + G+   
Sbjct: 185 A----VAWIEHW---LDLRDLFG-SEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236

Query: 251 LHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPEALIETYLTAHPRAR 309
           +HPH LRHSFATH+++   D+R VQELLGHA+++TTQIYTH+  + L   Y  AHPRA+
Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295