Pairwise Alignments

Query, 309 a.a., site-specific tyrosine recombinase XerD from Bifidobacterium breve UCC2003

Subject, 298 a.a., site-specific tyrosine recombinase from Escherichia coli BL21

 Score =  202 bits (515), Expect = 6e-57
 Identities = 124/299 (41%), Positives = 176/299 (58%), Gaps = 10/299 (3%)

Query: 11  EQFLVHIGIERGLAKATVSAYESDLNKYVAWLQTHGITKPDDIAKQDVEDYIAALDADGE 70
           EQFL  + +E+ LA+ T++AY  DL+  V WL   G+T        D++  +A     G 
Sbjct: 9   EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLAT-AQSDDLQALLAERLEGGY 67

Query: 71  SARSKARRLASIHEFHRFALAQHAVLADVAASVKAPKGASVLPDVLSVDEVSRLLDAAAV 130
            A S AR L+++    ++   +     D +A + +PK    LP  LS  +V RLL A  +
Sbjct: 68  KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127

Query: 131 GGSTDPVVLRDKALLEFMYATGCRVSEAVGTNLDDIDLEEKVVRLMGKGSKQRLVPLGSY 190
                P+ LRDKA+LE +YATG RVSE VG  + DI L + VVR++GKG+K+RLVPLG  
Sbjct: 128 D---QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184

Query: 191 ARNSVVAYLNAGRGELERRSTAKVPERRALFLNKRGKRISRQSVWEIVKTAGERAGI-TK 249
           A   +  YL  GR  L    +  V     LF ++R ++++RQ+ W  +K     AGI ++
Sbjct: 185 AVYWLETYLEHGRPWLLNGVSIDV-----LFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239

Query: 250 PLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPEALIETYLTAHPRA 308
            L PH LRH+FATHL+  GAD+R VQ LLGH+ ++TTQIYTHV+ E L + +   HPRA
Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298