Pairwise Alignments

Query, 783 a.a., type IIA DNA topoisomerase subunit B from Bifidobacterium breve UCC2003

Subject, 696 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit B from Bifidobacterium breve UCC2003

 Score =  350 bits (899), Expect = e-100
 Identities = 190/476 (39%), Positives = 282/476 (59%), Gaps = 29/476 (6%)

Query: 300 EEDFSLSSATEVVDGAFGEQPAHPRTVEFLHTGGVKDFVDFLSKGEPISDIWRIQGEGTY 359
           +E  +  +  EV   A GE     +TV + +  G+KD+VD+L K                
Sbjct: 240 DERVTDQAGDEVAGDAEGEPGEKHQTVTYQYLNGIKDYVDYLVK---------------V 284

Query: 360 KEETQAVGEGGELHAQEIERTCGVDIALRWVNGYDTTIMSFVNIVETPGGGMHVDGFMNA 419
           ++ T    +     A++++     ++A++W   Y   + +F N + T  GG H +GF  A
Sbjct: 285 RKATPVEEDVISFEAEDLKLGISAELAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAA 344

Query: 420 ITKQIRKAVEDNARKLKVNLKDSAMKVERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTA 479
           +T  + +   D     K  LKD    +  DD++ GL AV++ ++  PQF+GQTK  LG +
Sbjct: 345 LTSLVNRYARD-----KAILKDKDENLSGDDVREGLTAVISVKLTNPQFEGQTKTKLGNS 399

Query: 480 QVKPIVTRLTDKQFGEMITGSKRGYKEQSARVLEKIVGEMHARIQSRKAKEVTRRKNALE 539
           + K  V R+   + G+        +  ++  +++K +    AR+ ++KA+E TRRK+  E
Sbjct: 400 EAKTFVQRVMTDKLGDWFDA----HPAEAKNIIQKAIEASRARLAAKKARENTRRKSIFE 455

Query: 540 SASMPAKLSDCQPGNDDVAELFIVEGDSALGTAKAARNAGFQALLPIRGKILNVQKASIT 599
           SA MP KL DCQ  N +  ELFIVEGDSA G+A   RN   QA+LP+RGKILN ++AS+ 
Sbjct: 456 SAGMPDKLKDCQSSNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILNTERASLD 515

Query: 600 QMLSNKECAAIIQVVGAGSGQSFDIEQSRYHKIIMMTDADVDGAHIRILLLTLFYRYMRP 659
           +M+ +    ++I  VG G G+ FDI + RYHK+I+M DADVDGAHI  L LTLF+RYMRP
Sbjct: 516 RMMKSDTIESLITAVGGGYGEDFDISKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRP 575

Query: 660 LIEHGYVYAAVPPLHRIALTGSHKGEYIYTYSDDELAGKLAD--LDKKRIGYNDDIQRYK 717
           +I  GYVY A+PPL+R+  T   KG + + Y+D E    LA+   + +++   + IQRYK
Sbjct: 576 MITAGYVYVAMPPLYRLKWT---KGPHDFVYTDAERDRVLAEGKANGRQLPKGEGIQRYK 632

Query: 718 GLGEMDADQLADTTMDPRTRMLRRIRMEDAAQASEIFNLLMGDEVPPRKQFIVDNA 773
           GLGEM   +L +TTMDP  R+L+++ +EDAA A E F++LMGDEV PR+ FI  NA
Sbjct: 633 GLGEMSYQELWETTMDPEHRILKQVHIEDAAAADETFSMLMGDEVEPRRLFIQRNA 688



 Score =  211 bits (537), Expect = 1e-58
 Identities = 129/314 (41%), Positives = 174/314 (55%), Gaps = 38/314 (12%)

Query: 1   MPKEEYGAKDLSVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGFCNNIV 60
           M  E Y A DL VLEGL+AVR RPGMYIG+T  +GL H ++EI+DNSVDEALAG+ ++I 
Sbjct: 32  MAPEHYEASDLRVLEGLEAVRIRPGMYIGSTGPRGLHHLVYEIVDNSVDEALAGYASHIE 91

Query: 61  VTLHTDGSVEVADNGRGIPVDKEPKTGLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVGS 120
           VT+  D  + V D+GRGIPVD+ P  G+SGVE V+TKLHAG KFG   Y   GGLHGVG 
Sbjct: 92  VTILPDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHGVGI 151

Query: 121 SVVNALSSRLDVEVDRDGKTHHMAFHQGHPGVYADADPVNPSPDSPFKRTRKNKPTELEI 180
           SVVNALS+ +D+EV R G      FH      Y D  PV P         ++ +P     
Sbjct: 152 SVVNALSTHVDIEVRRQG------FHWTQ--TYVDQHPVAP--------LKQGEP----- 190

Query: 181 IGKVSPKTTGTRIRYWYDPEIFNKTAEFSYEQLIDRVRQTSFLVPGLKITIVDENVPKTN 240
                 ++TGT + +W DP+IF +T  + +E L  R +Q +FL  GLK+++ DE V    
Sbjct: 191 --MAEDESTGTSVTFWADPKIF-ETTIYDFETLRSRFQQMAFLNKGLKLSLTDERVTDQA 247

Query: 241 GADTVGT---EPNEDVAVVAESLNANETANATESFSGEDSPLDGFAELSDDASVDGDTEA 297
           G +  G    EP E    V             +  +G    +D   ++     V+ D  +
Sbjct: 248 GDEVAGDAEGEPGEKHQTV-----------TYQYLNGIKDYVDYLVKVRKATPVEEDVIS 296

Query: 298 PDEEDFSLSSATEV 311
            + ED  L  + E+
Sbjct: 297 FEAEDLKLGISAEL 310