Pairwise Alignments

Query, 783 a.a., type IIA DNA topoisomerase subunit B from Bifidobacterium breve UCC2003

Subject, 662 a.a., DNA topoisomerase 4 subunit B from Azospirillum sp. SherDot2

 Score =  249 bits (636), Expect = 3e-70
 Identities = 159/413 (38%), Positives = 228/413 (55%), Gaps = 41/413 (9%)

Query: 383 VDIALRWVNGYDTTIMSFVNIVETPGGGMHVDGFMNAITKQIRKAVEDNARKLKVNLKDS 442
           V+ A+ W +  +    ++ N V TP GG H  G   A+T+ ++   E    K        
Sbjct: 272 VEWAVAWPDDDEGFSHTYCNTVPTPQGGTHEAGLRTALTRGLKAYGELTNNK-------R 324

Query: 443 AMKVERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTAQVKPIVTRLTDKQFGEMITGSKR 502
           A +V  DD+      +++  + EP FQGQTK+ L TA+ + +V       F   ++G   
Sbjct: 325 AGQVTSDDVMGDACVLLSVFIREPHFQGQTKERLVTAEAQRLVETAVKDHFDHWLSGDP- 383

Query: 503 GYKEQSAR-VLEKIVGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQPGNDDVAELF 561
               QSA  +LE+++ +   R + +++KE+TR K+A     +P KL+DC   + +  ELF
Sbjct: 384 ----QSANGLLERLIEKAEERARRKQSKEMTR-KSATRRLRLPGKLADCSRNSPEGTELF 438

Query: 562 IVEGDSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQVVGAGSGQS 621
           +VEGDSA G+AK AR    QA+LP+RGKILNV  AS+ +M +N+E   + Q +G G G+ 
Sbjct: 439 LVEGDSAGGSAKQARQRETQAILPLRGKILNVASASVDKMKANQELNDLTQALGCGIGKD 498

Query: 622 FDIEQSRYHKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPPLHRIALTGS 681
           F  ++ RY ++I+MTDADVDGAHI  LL+T FYR M  LI+ G++Y A+PPL+R+    S
Sbjct: 499 FSTDKLRYERVIIMTDADVDGAHIASLLMTFFYREMPGLIQEGHLYLALPPLYRL----S 554

Query: 682 HKGEYIYTYSD---DELAGKLADLDKKRIGYNDDIQRYKGLGEMDADQLADTTMDPRTRM 738
           H  + +Y   D   DEL  K+        G   DI R+KGLGEM   QL DTTMDP  R 
Sbjct: 555 HGNKQVYARDDAHKDELLSKMFK------GKKPDISRFKGLGEMMPAQLRDTTMDPSKRS 608

Query: 739 LRRIRMEDAAQASE---------IFNLLMGDEVPPRKQFIVDN-----ADDFD 777
           L R+ + +AA   E         +   LMG     R +FI DN     ADD D
Sbjct: 609 LLRVVVPNAADPEEKPECERTRSLVEDLMGKRPELRFKFIQDNAKFVKADDID 661



 Score =  170 bits (431), Expect = 2e-46
 Identities = 98/228 (42%), Positives = 131/228 (57%), Gaps = 29/228 (12%)

Query: 4   EEYGAKDLSVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGFCNNIVVTL 63
           + Y A+D+ VLEGL+ VR+RPGMYIG TD + L H + E++DN++DEA+AG  + I + L
Sbjct: 13  DSYSAQDIEVLEGLEPVRRRPGMYIGGTDDRALHHLVAEVLDNAMDEAVAGHASRIDLEL 72

Query: 64  HTDGSVEVADNGRGIPVDKEPK-TGLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVGSSV 122
             D +V V DNGRGIP+D  PK  G S +EV++T LH+G KF N  Y   GGLHGVG SV
Sbjct: 73  TADYTVMVRDNGRGIPIDDHPKYPGKSALEVIMTTLHSGGKFSNKVYQTSGGLHGVGLSV 132

Query: 123 VNALSSRLDVEVDRDGKTHHMAFHQGHP-GVYADADPVNPSPDSPFKRTRKNKPTELEII 181
           VNALS RL VE+ R+ + +   + +G P G  A    VN                     
Sbjct: 133 VNALSDRLTVEIAREKQLYVQEYSRGLPQGPLAHRGNVN--------------------- 171

Query: 182 GKVSPKTTGTRIRYWYDPEIFNKTAEFSYEQLIDRVRQTSFLVPGLKI 229
                   GT IR+  DPEIF +TA F   +L    R  ++L  G++I
Sbjct: 172 ------RRGTTIRFHADPEIFGETAHFEPHRLYRLARSKAYLYRGVEI 213