Pairwise Alignments

Query, 546 a.a., ABC transporter substrate-binding protein from Bifidobacterium breve UCC2003

Subject, 545 a.a., oligopeptide ABC transporter substrate-binding protein OppA from Serratia liquefaciens MT49

 Score =  125 bits (315), Expect = 3e-33
 Identities = 134/512 (26%), Positives = 211/512 (41%), Gaps = 49/512 (9%)

Query: 39  NIISVYGSEPAHPLFPGAVTEAGGGKVVDQLFAGLVTYDVKGGIHNEVAESITSSDNATH 98
           NI+   G+E A  L P  V       ++  L  GLV+ D  G +    A    + D  T 
Sbjct: 42  NIVINNGTEVAS-LDPHKVEGIPESNIILNLLEGLVSTDANGHVVPAAAAQWENQDFKT- 99

Query: 99  YVIKIKKGWKFTDGTPVTAHSFVDAWNYTANSANKQGSASF--FSTIQGYDDLQKSDVDP 156
           +   ++    ++DG+PVTA  FV +W   A+       AS+  ++ I+  DD+      P
Sbjct: 100 WTFHLRPEAVWSDGSPVTAQDFVYSWQRLADPKTGSPYASYLQYAKIENIDDILTGKKGP 159

Query: 157 SATLSGLKVVDDYTIDVKLNQPDSAFPVKSGSHAYMPLPESAFKDPKKFGE------NPV 210
            +   G+K +DD T+ V L++P   F       A MP+  +  +   KFGE      N V
Sbjct: 160 QSL--GIKAIDDKTLQVTLSEPVPYFISMLSRTALMPVKRAVIE---KFGEKWTLPANYV 214

Query: 211 GNGPYKFVSWSHNRSIKMVKNPDYKGNRVAKNDGLDFMIYTSPDSAYADLRGGNLDFTH- 269
           GNG Y+   W  N  I + ++P Y  N+    D   F+   S  S     R G +D T+ 
Sbjct: 215 GNGAYRLKEWVVNERIVLERSPSYWNNKKTVIDKATFLPIASEVSDVNRFRSGEIDITNS 274

Query: 270 AIPSTALKTFQSDKSIKAYNQPGGNTLTFTIPEWLDHFGQNEEGNLRRQAISMSIDRKTI 329
           AIP       + +   + +  P   T  + I      F         R A+ +++DR  I
Sbjct: 275 AIPPNLFAKMKKEIPEQLHVNPYLCTFYYEINNQRAPFTDPRV----RAAVKLTLDRDII 330

Query: 330 AEKI----------FNNTSTPAVDFIAAPISAYSKNLKGNEVLKYNPKKAKELWAKANAI 379
           A KI          F  T T    F A   +++S+  +  E        A++L  +A   
Sbjct: 331 ANKIMGQGQIPAFSFTPTFTEGAKFTAPAWASWSQEQRNAE--------ARKLLEQAGFS 382

Query: 380 SPWSGEFGIAYNADGTAKNWVEAICNYIKNTL--DIDAKSIPMSTSDEFLSNVDSGKMTS 437
           +    +F + YN     K    A  +  K  L  ++  ++    TS   L +   G+   
Sbjct: 383 AAKPLKFTLLYNTSDQNKQQAIAAASMWKKNLGAEVTLRNQEWKTS---LESRHQGQYDI 439

Query: 438 AYRSGWGPDYPSADNYLVQLYDSSSADGKGGNSGNYKNPEFDAMMDKALSAPSTEEADKY 497
           A R+ W  DY     +L  +  +SS      N+  YK+P FDA+M   L AP        
Sbjct: 440 A-RATWCGDYNEPSAFLNLVLSNSSI-----NTIFYKSPTFDALMAGTLKAPDEAARAAL 493

Query: 498 YQQGEEILLQDLPAIPLWNQNATAASTSAVSG 529
           YQQ E  L +D   IP++ + +      +V G
Sbjct: 494 YQQAEAQLDKDSALIPVYYRVSARLIRPSVGG 525