Pairwise Alignments

Query, 546 a.a., ABC transporter substrate-binding protein from Bifidobacterium breve UCC2003

Subject, 545 a.a., oligopeptide ABC transporter substrate-binding protein OppA from Serratia liquefaciens MT49

 Score =  136 bits (343), Expect = 2e-36
 Identities = 141/531 (26%), Positives = 219/531 (41%), Gaps = 42/531 (7%)

Query: 5   HITSLVAAGAAIVMLLSGCGSTGSFSNASSTSG------SNIISVYGSEPAHPLFPGAVT 58
           +IT      A I+  L G  +TGS   A   +G        I+   GSE    L P  + 
Sbjct: 3   NITKKTILAAGIIAAL-GITATGSAFAADVPAGVQLADKQEIVKNNGSE-VQSLDPHKIE 60

Query: 59  EAGGGKVVDQLFAGLVTYDVKGGIHNEVAESITSSDNATHYVIKIKKGWKFTDGTPVTAH 118
                 V   L  GL    + G I   VAES  + D    +   ++K  K+++G PVTA 
Sbjct: 61  GVPENNVTRDLMEGLANNGLDGSIVPGVAESWDNKDFKV-WTFHLRKDAKWSNGKPVTAQ 119

Query: 119 SFVDAWNYTANSANKQGSASF--FSTIQGYDDLQKSDVDPSATLSGLKVVDDYTIDVKLN 176
            FV +W    +       AS+  ++ ++  DD+     D S    G+K +DD+T  V L 
Sbjct: 120 DFVYSWQRVVDPKTASPYASYLQYAHVENVDDVIAGKKDKSTL--GVKAIDDHTFQVTLT 177

Query: 177 QPDSAFPVKSGSHAYMPLPESAFKDPKKFGE------NPVGNGPYKFVSWSHNRSIKMVK 230
           +P       +  +A  P+ + A +   KFGE      N V NG YK   W  N  I + +
Sbjct: 178 EPVPYLVEMTPHYAMKPVYKEAVE---KFGEKWTLPANYVSNGAYKLKDWVVNERIVLER 234

Query: 231 NPDYKGNRVAKNDGLDFMIYTSPDSAYADLRGGNLDFTHA-IPSTALKTFQSDKSIKAYN 289
           NP+Y  N     + + F+  +S  +     R G +D T+  +P    +  + +   + + 
Sbjct: 235 NPEYWDNAKTIINKVTFLPISSEVTDVNRYRTGEIDMTYNNMPIELFQKLKKEIPKEVHV 294

Query: 290 QPGGNTLTFTIPEWLDHFGQNEEGNLRRQAISMSIDRKTIAEKIFNNTSTPAVDFIAAPI 349
            P   T  + I      F         R+A+ + +DR  I  K+ N    PA  F   P 
Sbjct: 295 DPYLCTYYYEINNQKAPFTDARV----REALKLGLDRDIITNKVKNQGDLPAYSF--TPP 348

Query: 350 SAYSKNLKGNEVLKYNPKKAKELWAKANAISPWSG----EFGIAYNADGTAKNWVEAICN 405
                 L   E   +  +K  E+  K  A + +       F + YN     K    A  +
Sbjct: 349 YTDGAKLTPPEWFSWTQEKRNEVAKKLLADAGYGPGKPLTFSLLYNTSDLHKKLAIAAAS 408

Query: 406 YIKNTLDIDAKSIPMSTSDEFLSNVDSGKMTSAYRSGWGPDYPSADNYL-VQLYDSSSAD 464
             K  L +D K +       FL     G    A R+GW  DY    ++L + L DSSS  
Sbjct: 409 IWKKNLGVDVKLVNQEWKT-FLDTRHQGTYDVA-RAGWCADYNEPSSFLNMMLSDSSS-- 464

Query: 465 GKGGNSGNYKNPEFDAMMDKALSAPSTEEADKYYQQGEEILLQDLPAIPLW 515
               N+ +YK+ EFD +M   L+A + EE  + YQ+ E  L +D   +P++
Sbjct: 465 ----NTPHYKSAEFDKLMANVLTAKTKEERAELYQKAEVQLDKDSAIVPVY 511