Pairwise Alignments
Query, 491 a.a., 30S ribosomal protein S1 from Bifidobacterium breve UCC2003
Subject, 561 a.a., SSU ribosomal protein S1p from Hydrogenophaga sp. GW460-11-11-14-LB1
Score = 268 bits (684), Expect = 5e-76
Identities = 139/350 (39%), Positives = 220/350 (62%), Gaps = 9/350 (2%)
Query: 20 EDFIKAVDSTIKNFD--DGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPD 77
E F + ++K + G+++ VV+I+H+ V+++ G K+E +P E K+ +
Sbjct: 3 ESFAALFEESLKRAEMRSGEVITAEVVRIEHNHVVVNAGLKSEAYVPLAEF---KNDQGE 59
Query: 78 EVVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGG 137
V+VGD + + + E+ G +LS+ +A+ +W +EK E+ V GT VKGG
Sbjct: 60 LEVQVGDFVSVAIDSVENGFGDTLLSRDKAKRLASWMSLEKALESGEFVTGTTSSKVKGG 119
Query: 138 LIVDI-GLRGFLPASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQS 196
L V + G+ FLP SLV+ R +DL+PY + ++ K+++LD+ RNNVVLSRR +E +
Sbjct: 120 LKVMVNGISAFLPGSLVDSRPTKDLTPYENKTLEFKVIKLDRKRNNVVLSRRAVVEASMG 179
Query: 197 EVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKVGD 256
E R + LK+G I GVV +I +GAFVDLGG+DGL+H+++++W+ + HPSEVV G
Sbjct: 180 EERAKLMDTLKEGAIVHGVVKNITEYGAFVDLGGIDGLLHITDMAWRRVRHPSEVVTAGQ 239
Query: 257 KVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVEDG 316
++T ++L D ++ R+SL LK +DPW +R + G + GK+T I +G F+ +E G
Sbjct: 240 EITAKILKFDTEKHRVSLGLKQMGDDPWMGVSRRYPQGTRMFGKITNIADYGAFVELEPG 299
Query: 317 IEGLVHISEL--ANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQ 364
IEGLVH+SE+ N++V P +V G+ V V V+D+D D+RRISL +KQ
Sbjct: 300 IEGLVHVSEMDWTNKNVA-PSKLVSLGDEVEVMVLDIDEDKRRISLGMKQ 348
Score = 162 bits (411), Expect = 2e-44
Identities = 111/304 (36%), Positives = 173/304 (56%), Gaps = 21/304 (6%)
Query: 72 KDVDPDEVVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVI 131
KD+ P E T+E V+ + K ++LS+ RA E + G+ E+ K D + EG ++
Sbjct: 142 KDLTPYE----NKTLEFKVIKLDRKRNNVVLSR-RAVVEASMGE-ERAKLMDTLKEGAIV 195
Query: 132 EAV-----KGGLIVDIG-LRGFLPASLVEMRRVRDLSPYI--GQKIKAKILELDKNRNNV 183
V + G VD+G + G L + + RRVR S + GQ+I AKIL+ D ++ V
Sbjct: 196 HGVVKNITEYGAFVDLGGIDGLLHITDMAWRRVRHPSEVVTAGQEITAKILKFDTEKHRV 255
Query: 184 VLSRRQYLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSW 242
L +Q ++ V + +G G +++I ++GAFV+L G++GL+HVSE+ W
Sbjct: 256 SLGLKQMGDDPWMGVSRRY----PQGTRMFGKITNIADYGAFVELEPGIEGLVHVSEMDW 311
Query: 243 KHID-HPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQIVKGKV 301
+ + PS++V +GD+V V VLD+D D+ RISL +K + +PW FA G VKG +
Sbjct: 312 TNKNVAPSKLVSLGDEVEVMVLDIDEDKRRISLGMKQCRANPWHEFAEQTKRGDRVKGPI 371
Query: 302 TKIVQFGVFISVEDGIEGLVHISELA-NRHVENPETVVKPGETVFVKVIDVDLDRRRISL 360
I FGVF+ + GI+GLVH+S+L+ N E K G+ V V+ +D++R RISL
Sbjct: 372 KSITDFGVFVGLAAGIDGLVHLSDLSWNEPGEAAVRNYKKGQEVDAIVLAIDVERERISL 431
Query: 361 SLKQ 364
+KQ
Sbjct: 432 GIKQ 435
Score = 144 bits (362), Expect = 1e-38
Identities = 107/378 (28%), Positives = 192/378 (50%), Gaps = 26/378 (6%)
Query: 4 NNIEVTKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVI 63
NN+ +++ A+ + E+ K +D T+K +G +V G V I +D+G +G++
Sbjct: 164 NNVVLSRRAVVEASMGEERAKLMD-TLK---EGAIVHGVVKNITEYGAFVDLG-GIDGLL 218
Query: 64 PSRELSIKKDVDPDEVVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEAD 123
+++ ++ P EVV G I A ++ + ++ R+ L K+ + W + +
Sbjct: 219 HITDMAWRRVRHPSEVVTAGQEITAKILKFDTEKHRVSLGLKQMG-DDPWMGVSRRYPQG 277
Query: 124 GVVEGTVIEAVKGGLIVDI--GLRGFLPASLVEMRRVRDLSPY----IGQKIKAKILELD 177
+ G + G V++ G+ G + S ++ ++++P +G +++ +L++D
Sbjct: 278 TRMFGKITNIADYGAFVELEPGIEGLVHVSEMDWTN-KNVAPSKLVSLGDEVEVMVLDID 336
Query: 178 KNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIH 236
+++ + L +Q E F Q K+G +G + SI +FG FV L G+DGL+H
Sbjct: 337 EDKRRISLGMKQCRANPWHE----FAEQTKRGDRVKGPIKSITDFGVFVGLAAGIDGLVH 392
Query: 237 VSELSWKHIDHPSEVV----KVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHV 292
+S+LSW + P E K G +V VL +D++RERISL +K DP+ F +
Sbjct: 393 LSDLSW---NEPGEAAVRNYKKGQEVDAIVLAIDVERERISLGIKQLDGDPFTTFVSVND 449
Query: 293 PGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGETVFVKVIDVD 352
G IV GKV + G I + + + G + SE++ VE+ V+K G+ V V++VD
Sbjct: 450 KGSIVTGKVKTVDAKGAEIDLGEDVLGYLRASEISRDRVEDARNVLKEGDEVNAVVVNVD 509
Query: 353 LDRRRISLSLKQANDSVD 370
R I LS+K A D+ D
Sbjct: 510 RKTRNIQLSIK-AKDAAD 526