Pairwise Alignments

Query, 491 a.a., 30S ribosomal protein S1 from Bifidobacterium breve UCC2003

Subject, 557 a.a., 30S ribosomal protein S1 (NCBI) from Escherichia coli BW25113

 Score =  285 bits (730), Expect = 2e-81
 Identities = 146/350 (41%), Positives = 227/350 (64%), Gaps = 9/350 (2%)

Query: 20  EDFIKAVDSTIKNFDD--GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPD 77
           E F +  + ++K  +   G +V G VV ID D VL+D G K+E  IP+ +    K+   +
Sbjct: 3   ESFAQLFEESLKEIETRPGSIVRGVVVAIDKDVVLVDAGLKSESAIPAEQF---KNAQGE 59

Query: 78  EVVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGG 137
             ++VGD ++  +   ED  G  +LS+++A+   AW  +EK  E    V G +   VKGG
Sbjct: 60  LEIQVGDEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGG 119

Query: 138 LIVDI-GLRGFLPASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQS 196
             V++ G+R FLP SLV++R VRD     G++++ K+++LD+ RNNVV+SRR  +E   S
Sbjct: 120 FTVELNGIRAFLPGSLVDVRPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENS 179

Query: 197 EVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKVGD 256
             R+  L  L++G   +G+V ++ ++GAFVDLGGVDGL+H+++++WK + HPSE+V VGD
Sbjct: 180 AERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGD 239

Query: 257 KVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVEDG 316
           ++TV+VL  D +R R+SL LK   EDPW   A+ +  G  + G+VT +  +G F+ +E+G
Sbjct: 240 EITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEG 299

Query: 317 IEGLVHISEL--ANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQ 364
           +EGLVH+SE+   N+++ +P  VV  G+ V V V+D+D +RRRISL LKQ
Sbjct: 300 VEGLVHVSEMDWTNKNI-HPSKVVNVGDVVEVMVLDIDEERRRISLGLKQ 348



 Score =  163 bits (412), Expect = 2e-44
 Identities = 124/410 (30%), Positives = 209/410 (50%), Gaps = 31/410 (7%)

Query: 83  GDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKE--ADGV-VEGTVIEAVKGGLI 139
           G  +E  V+  + K   +++S++         + +++ E   +G+ V+G V      G  
Sbjct: 149 GKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAF 208

Query: 140 VDIG-LRGFLPASLVEMRRVRDLSPYI--GQKIKAKILELDKNRNNVVLSRRQYLEETQS 196
           VD+G + G L  + +  +RV+  S  +  G +I  K+L+ D+ R  V L  +Q  E+   
Sbjct: 209 VDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWV 268

Query: 197 EVRETFLSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHID-HPSEVVKV 254
            + + +     +G    G V+++ ++G FV++  GV+GL+HVSE+ W + + HPS+VV V
Sbjct: 269 AIAKRY----PEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNV 324

Query: 255 GDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVE 314
           GD V V VLD+D +R RISL LK  + +PWQ+FA TH  G  V+GK+  I  FG+FI ++
Sbjct: 325 GDVVEVMVLDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGLD 384

Query: 315 DGIEGLVHISELA-NRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQANDSVDP-- 371
            GI+GLVH+S+++ N   E      K G+ +   V+ VD +R RISL +KQ  +  DP  
Sbjct: 385 GGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAE--DPFN 442

Query: 372 ---ASEDFDPAIYGMPAEYDEQG-NYKYPEGFDPNTNEWIAGYEKQREEWEAQYAAAHDL 427
              A       + G     D +G   +  +G +     ++   E  R+  E         
Sbjct: 443 NWVALNKKGAIVTGKVTAVDAKGATVELADGVE----GYLRASEASRDRVEDATLVLSVG 498

Query: 428 WEEHKEFVAKELANAAESAAADGQNQKEEKPV------EETSNYSSAAPA 471
            E   +F   +  N A S +   +++ +EK        +E +N+S+ A A
Sbjct: 499 DEVEAKFTGVDRKNRAISLSVRAKDEADEKDAIATVNKQEDANFSNNAMA 548



 Score = 32.7 bits (73), Expect = 3e-05
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)

Query: 36  GDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVTKED 95
           G +V G V  +D     +++    EG + + E S  +  D   V+ VGD +EA   T  D
Sbjct: 451 GAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEA-KFTGVD 509

Query: 96  KEGRLILSKKRAQYE 110
           ++ R I    RA+ E
Sbjct: 510 RKNRAISLSVRAKDE 524