Pairwise Alignments
Query, 491 a.a., 30S ribosomal protein S1 from Bifidobacterium breve UCC2003
Subject, 592 a.a., Ribosomal protein S1 from Echinicola vietnamensis KMM 6221, DSM 17526
Score = 282 bits (721), Expect = 3e-80
Identities = 135/346 (39%), Positives = 229/346 (66%), Gaps = 8/346 (2%)
Query: 24 KAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVG 83
K D T+ + ++++GTVV I+ +V+++IG+K++G++P E +D+ PD +++G
Sbjct: 31 KLYDETLTEISEKEVIKGTVVGINDKDVIINIGFKSDGLVPRTEF---RDL-PD--LKIG 84
Query: 84 DTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDI- 142
D +E + +E+ G+L+LS+K+A+ RAW DIE E D V+EG V KGGLIVDI
Sbjct: 85 DEVELFIEEQENALGQLVLSRKKAKMVRAWQDIEDALEYDNVIEGLVKRRTKGGLIVDIY 144
Query: 143 GLRGFLPASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETF 202
G+ FLP S ++++ +RD Y+G+K++ K+++++ +NVV+S + +E+ + +
Sbjct: 145 GVEAFLPGSQIDVKPIRDFDVYVGKKMEVKVVKINHANDNVVVSHKVLIEKDLEKQKAEI 204
Query: 203 LSQLKKGQIREGVVSSIVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEV 262
L+ L+KGQ+ EGV+ ++ NFG F+DLGGVDGL+H++++SW I+HP EV+ + DKV V V
Sbjct: 205 LNNLEKGQVLEGVIKNMTNFGVFIDLGGVDGLLHITDISWGRINHPEEVLNLDDKVQVVV 264
Query: 263 LDVDLDRERISLSLKATQEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVEDGIEGLVH 322
LD D D++RISL +K PW + G VKGK+ + +G F+ + G+EGL+H
Sbjct: 265 LDFDDDKKRISLGMKQLTAHPWDSLSAELEVGSKVKGKIVNVADYGAFLELAPGVEGLIH 324
Query: 323 ISELA-NRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQAND 367
+SE++ ++H+ NP VK G+ + V+ +D + R++SL +KQ +
Sbjct: 325 VSEMSWSQHLRNPADFVKVGDEIEAVVLTLDKEERKMSLGIKQLTE 370
Score = 147 bits (370), Expect = 1e-39
Identities = 111/405 (27%), Positives = 197/405 (48%), Gaps = 23/405 (5%)
Query: 4 NNIEVTKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVI 63
N+ V + + E+D K + N + G ++EG + + + V +D+G +G++
Sbjct: 179 NHANDNVVVSHKVLIEKDLEKQKAEILNNLEKGQVLEGVIKNMTNFGVFIDLG-GVDGLL 237
Query: 64 PSRELSIKKDVDPDEVVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEAD 123
++S + P+EV+ + D ++ +V+ +D + R+ L K+ W + E
Sbjct: 238 HITDISWGRINHPEEVLNLDDKVQVVVLDFDDDKKRISLGMKQLT-AHPWDSLSAELEVG 296
Query: 124 GVVEGTVIEAVKGGLIVDI--GLRGFLPASLVEM-RRVRDLSPYI--GQKIKAKILELDK 178
V+G ++ G +++ G+ G + S + + +R+ + ++ G +I+A +L LDK
Sbjct: 297 SKVKGKIVNVADYGAFLELAPGVEGLIHVSEMSWSQHLRNPADFVKVGDEIEAVVLTLDK 356
Query: 179 NRNNVVLSRRQYLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHV 237
+ L +Q E+ + ++ +++ G +GVV ++ NFG F++L G+DGL+HV
Sbjct: 357 EERKMSLGIKQLTEDPWT--KQDMVTKYAVGTKHQGVVRNLTNFGLFLELEEGIDGLVHV 414
Query: 238 SELSW-KHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQI 296
S+LSW K I HPSE VKV D++ V VL++D+D R++L K +E+PW F G
Sbjct: 415 SDLSWTKKIKHPSEYVKVNDELEVVVLELDVDNRRLALGHKQLEENPWDTFEGVFPVGSS 474
Query: 297 VKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGETVFVKVIDVDLDRR 356
K V G + + G+EG I L + + V+ G+ V V + D +
Sbjct: 475 HKCTVVSKNDKGAVLELPYGLEGFATIKNLE----KEDGSQVEVGDAVDFVVTEFSKDDK 530
Query: 357 RISLSLKQANDSVDPASEDFDPAIYGMPAEYDEQGNYKYPEGFDP 401
RI LS ED P+ PA+ K P G DP
Sbjct: 531 RIVLS------HTATFREDAMPS--KQPAKKAPSTAKKKPAGGDP 567
Score = 94.0 bits (232), Expect = 1e-23
Identities = 76/269 (28%), Positives = 141/269 (52%), Gaps = 18/269 (6%)
Query: 103 SKKRAQYERAWGD-IEKIKEADGVVEGTVIEAVKGGLIVDIGLR--GFLPASLVEMRRVR 159
S +RA+ E+ + + + +I E + V++GTV+ +I++IG + G +P + E R +
Sbjct: 23 SAERAEMEKLYDETLTEISEKE-VIKGTVVGINDKDVIINIGFKSDGLVPRT--EFRDLP 79
Query: 160 DLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQIREGVVSSI 219
DL IG +++ I E + +VLSR+ + + L+ + EG+V
Sbjct: 80 DLK--IGDEVELFIEEQENALGQLVLSRK---KAKMVRAWQDIEDALEYDNVIEGLVKRR 134
Query: 220 VNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKAT 279
G VD+ GV+ + S++ K I V VG K+ V+V+ ++ + + +S K
Sbjct: 135 TKGGLIVDIYGVEAFLPGSQIDVKPIRDFD--VYVGKKMEVKVVKINHANDNVVVSHKVL 192
Query: 280 QEDPWQR----FARTHVPGQIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPE 335
E ++ GQ+++G + + FGVFI + G++GL+HI++++ + +PE
Sbjct: 193 IEKDLEKQKAEILNNLEKGQVLEGVIKNMTNFGVFIDL-GGVDGLLHITDISWGRINHPE 251
Query: 336 TVVKPGETVFVKVIDVDLDRRRISLSLKQ 364
V+ + V V V+D D D++RISL +KQ
Sbjct: 252 EVLNLDDKVQVVVLDFDDDKKRISLGMKQ 280