Pairwise Alignments

Query, 1196 a.a., transcription-repair coupling factor from Bifidobacterium breve UCC2003

Subject, 1148 a.a., transcription-repair coupling factor (NCBI) from Escherichia coli BW25113

 Score =  648 bits (1672), Expect = 0.0
 Identities = 409/1090 (37%), Positives = 604/1090 (55%), Gaps = 71/1090 (6%)

Query: 66   ALAAAIAQGVNGGAGKPVVLVVASGREAEETVGSLRSWYDGDPNDIAQLEAWETLPHERL 125
            A A  +A+     AG PVVL+    + A      +  + D     +  L  WETLP++  
Sbjct: 26   ACATLVAEIAERHAG-PVVLIAPDMQNALRLHDEISQFTD---QMVMNLADWETLPYDSF 81

Query: 126  SPRADTVASRMAVFRRLKHPSDANPMFGPIRILVMPIRSLIQPVV-QGLGDVEPLVFTVG 184
            SP  D ++SR++   +L              +L++P+ +L+Q V          LV   G
Sbjct: 82   SPHQDIISSRLSTLYQLPTMQRG--------VLIVPVNTLMQRVCPHSFLHGHALVMKKG 133

Query: 185  EDLPLDEAAKRLIENAYTRVELVMDRGEFAVRGGILDVFPPTAPHPVRIEFFGDEIDTIK 244
            + L  D    +L    Y  V+ VM+ GE+A RG +LD+FP  +  P R++FF DEID+++
Sbjct: 134  QRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLR 193

Query: 245  EFHASDQRTYGEGLKTIWATACRELQLTDAV----RTRAKALIGSIPNAEDMLESIANAI 300
             F    QRT  E ++ I      E     A     R++ +       + E + + ++   
Sbjct: 194  VFDVDSQRTLEE-VEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGT 252

Query: 301  PVEGMESLMPALVDH-LEPVGSMLPKHAVVLLSDPEKLRRSAEDLAKTANEFLAASW-HV 358
               G+E   P      L P+ S  P + +++         +  DL  +A  F A +    
Sbjct: 253  LPAGIEYWQPLFFSEPLPPLFSYFPANTLLV---------NTGDLETSAERFQADTLARF 303

Query: 359  AASGHGAGAPISFDEASFLDYAETISSLEY-------SEHPVIRLTSFGVDTTLAGHVQL 411
               G     P+   ++ +L   E  S L+        +EH   +  +  +       + +
Sbjct: 304  ENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAV 363

Query: 412  DAQNPAEFRGDEAKASQGIDGLLDAGFHVTITAAAAGTL-ARLKRA------LNTTGITT 464
             AQ  A       K  +  DG +           A G L AR+K A      L+      
Sbjct: 364  QAQQKAPLDALR-KFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRG 422

Query: 465  FDTIRSQAIDGFVDNAAKIALLTERDLTGRSSAVAVAKTPKRRRKAID-------LVELK 517
               +   A  GFVD    +AL+ E DL G      VA+  +  R+ I+       L EL 
Sbjct: 423  RYLMIGAAEHGFVDTVRNLALICESDLLGER----VARRRQDSRRTINPDTLIRNLAELH 478

Query: 518  KGDYVVHEQHGIGRFIEMRQRTIGTGANKTTREYLVIEYAPSKRGAPADKLFIPTDQLDQ 577
             G  VVH +HG+GR+  M   T+  G    T EYL++ YA         KL++P   L  
Sbjct: 479  IGQPVVHLEHGVGRYAGMT--TLEAGG--ITGEYLMLTYANDA------KLYVPVSSLHL 528

Query: 578  VSKYIGA--EAPKLNKLGGSDWAATKAKARKHVHEIADDLIKLYSARQRAKGFAFSPDTP 635
            +S+Y G   E   L+KLGG  W+  + KA + V ++A +L+ +Y+ R   +GFAF  D  
Sbjct: 529  ISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDRE 588

Query: 636  WQKELEDAFPYQETADQLTTIDEVKSDMEKPVPMDRLICGDVGFGKTEIAVRAAFKAVQD 695
              +   D+FP++ T DQ   I+ V SDM +P+ MDRL+CGDVGFGKTE+A+RAAF AV +
Sbjct: 589  QYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN 648

Query: 696  GKQVAVLVPTTLLVQQHQETFTDRFEGFPVNVAAMSRFQTTKEINATIEGLENGTVDVVI 755
             KQVAVLVPTTLL QQH + F DRF  +PV +  +SRF++ KE    +  +  G +D++I
Sbjct: 649  HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILI 708

Query: 756  GTHKLLNPKIKFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVT 815
            GTHKLL   +KFKDLGL+I+DEE RFGV HKE +KA+R NVD+L+L+ATPIPRTL MA++
Sbjct: 709  GTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMS 768

Query: 816  GIREMSTLATPPEDRLPVLTYVGAYEDAQVTAAVRRELLRGGQVFYVHNRVQDISSIADK 875
            G+R++S +ATPP  RL V T+V  Y+   V  A+ RE+LRGGQV+Y++N V++I   A++
Sbjct: 769  GMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAER 828

Query: 876  IHTLVPESRVGIAHGKMGEKQLDQIIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHA 935
            +  LVPE+R+ I HG+M E++L++++ DF H+  +VLVCTTIIETG+DI  ANT+I++ A
Sbjct: 829  LAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERA 888

Query: 936  DRFGLSQLHQLRGRVGRGRERAYAYFLYDPSKPMTEQSHDRLATIAQNTALGSGFDVAMK 995
            D FGL+QLHQLRGRVGR   +AYA+ L    K MT  +  RL  IA    LG+GF +A  
Sbjct: 889  DHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATH 948

Query: 996  DLELRGTGNLLGDEQSGHIEGVGFDLYVRMVSEAVEKYK---EPD-EDVEPVSVSIDLPI 1051
            DLE+RG G LLG+EQSG +E +GF LY+ ++  AV+  K   EP  ED+      ++L +
Sbjct: 949  DLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRM 1008

Query: 1052 EASIPIDYIDSDKLRLEAYRKLASARNEADLKDLKEELTDRYGKPPVEFETLFDVARLKF 1111
             + +P D+I     RL  Y+++ASA+ E +L+++K EL DR+G  P    TL D+ARL+ 
Sbjct: 1009 PSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQ 1068

Query: 1112 KARKLGVSEI 1121
            +A+KLG+ ++
Sbjct: 1069 QAQKLGIRKL 1078