Pairwise Alignments

Query, 299 a.a., diaminopimelate epimerase from Bifidobacterium breve UCC2003

Subject, 274 a.a., diaminopimelate epimerase from Escherichia coli BL21

 Score = 87.8 bits (216), Expect = 2e-22
 Identities = 84/311 (27%), Positives = 128/311 (41%), Gaps = 70/311 (22%)

Query: 8   TKTHATGNDFVVYLDKTGDFEPTADEIRFLCDRHFGIGGDGLIRLTKPEFVSDLSDEQIM 67
           +K H  GNDF+V    T +   + + IR L DRH G+G D L+ +  P            
Sbjct: 4   SKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPY----------- 52

Query: 68  AVQAGDAEWFMDYR--NADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKIL 125
                D E    YR  NADGS    CGNG R    F + +G+ +  +  R+ T  G  +L
Sbjct: 53  -----DPELDFHYRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRD-IRVSTANGRMVL 106

Query: 126 TPRGNVKPYGANVFQVEMGEWKIGETDAYEVTIPGNDGSARGTF-------------VDM 172
           T           V   ++    +GE +     +P     A  T+             V M
Sbjct: 107 T-----------VTDDDLVRVNMGEPNFEPSAVPFRANKAEKTYIMRAAEQTILCGVVSM 155

Query: 173 GNPHVVAVIEDAFSTLPVVEDLDLVTKPVVNPTIESDQ------NVEFVRIDDIDHNTAV 226
           GNPH V            V+D+D      + P +ES +      N+ F+++   +H    
Sbjct: 156 GNPHCVI----------QVDDVDTAAVETLGPVLESHERFPERANIGFMQVVKREH---- 201

Query: 227 GEATMRVNERGCGETLSCGTGLCATGIVLRAKTGISHWDITVRGGTLRVDVT----DEDV 282
               +RV ERG GET +CG+G CA  + +  + G+   ++ V     R+D+        +
Sbjct: 202 --IRLRVYERGAGETQACGSGACA-AVAVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPL 258

Query: 283 KLTGSATLVAD 293
            +TG A  V D
Sbjct: 259 YMTGPAVHVYD 269