Pairwise Alignments

Query, 176 a.a., transcription antitermination factor NusB from Bifidobacterium breve UCC2003

Subject, 139 a.a., transcription antitermination protein NusB (NCBI) from Escherichia coli BW25113

 Score = 57.0 bits (136), Expect = 1e-13
 Identities = 38/124 (30%), Positives = 67/124 (54%), Gaps = 1/124 (0%)

Query: 2   ARSTARKRALNTLYEADEKGQDILSLLDERIAHPGAQTPLPDYAIDIVKGVAEHRRQIDM 61
           AR  AR+ A+  LY       DI  +  + +A    +     Y  +++ GVA +   +D 
Sbjct: 5   ARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDG 64

Query: 62  TLDDHSTGWKVRRMGVVDRNILRIAAWEILFNDEVPDKVAIDEALALAKTLCDDDSPAFI 121
            +  + +   +  +G V++ +LRIA +E+    +VP KVAI+EA+ LAK+   +DS  F+
Sbjct: 65  LMKPYLSRL-LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV 123

Query: 122 HGLL 125
           +G+L
Sbjct: 124 NGVL 127