Pairwise Alignments

Query, 834 a.a., excinuclease ABC subunit A from Bifidobacterium breve UCC2003

Subject, 938 a.a., uvrA paralog in Bacteroidetes (from data) from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  379 bits (974), Expect = e-109
 Identities = 228/696 (32%), Positives = 371/696 (53%), Gaps = 47/696 (6%)

Query: 151 GKEFHAPGAESLAFNSA-GACPTCSGTGIVREVNRAALVPDESKSIDDGAVLPWGSLMWD 209
           G  F  P     +FN+  GAC TC G G V  ++   ++PD+S SI +GA+ PW      
Sbjct: 272 GLSFELPSVNFFSFNNPYGACKTCEGFGSVLGIDPDLVIPDKSLSIYEGAIAPWRGETTK 331

Query: 210 LMKQVCGAMGVRTNVP----FSELTPEERDIVFNGPAIKKHILYKPKKGDDFAELDFTYF 265
                    G+  + P    + EL    +D+++ G +              F  LD  + 
Sbjct: 332 KWAAPLIKNGIHFDFPIHRPYEELDEAHKDLIWKGNSY-------------FKGLDAFF- 377

Query: 266 NAVYTVENALAKAKDEKGLKRVARFLKEGPCADCGGTRLSAAARAPHVRGLNLAEASAMT 325
                 E+  +K    +    ++RF     C DC GTRL   A    V G ++ +   M 
Sbjct: 378 ------EHLQSKTHKIQYRVMLSRFRGRTTCPDCKGTRLRKDAAYVKVNGHSITDIVLMP 431

Query: 326 LDTAVDWVRGVPESLPADMRPMATNICESFLNVARRLLDLGLGYLALDRAGATLSTGERQ 385
           +D A+ + + +   L       A  + +  LN    +  +GLGYL L+R  ++LS GE Q
Sbjct: 432 IDRALAFFQNI--QLTEAEEKTANRLLKEILNRLEYIDKVGLGYLTLNRLTSSLSGGEYQ 489

Query: 386 RVQLARAVRNRTTGVLYVLDEPSIGLHPSNVDGLLGVMRDLVADGNSVVVVDHDVRVLKA 445
           R++LA ++ +   G +Y+LDEPSIGLHP + D L+ V++ L   GN+V+VV+H+ +++KA
Sbjct: 490 RIKLATSLGSALVGSMYILDEPSIGLHPRDSDRLISVLKSLRDMGNTVIVVEHEEKIMKA 549

Query: 446 AGHLIEMGPVAGAEGGHVIAQGTVDEVAANPSSRIAPFLADNVSARIRERVAESQVFDLG 505
           A  ++++GP AG  GG ++ QG +DE+ A+  +  A +L       I++   + +     
Sbjct: 550 ADEIVDIGPEAGVNGGKLVFQGKLDELLAHGETYTAKYLKGEEKIDIKQGNRKWK----D 605

Query: 506 HIRMTTSQLHTVKPLDVDIPRGRLVAVTGVSGSGKTTMVLESLIPALKAQAVGERLPEHV 565
            I +  ++ + +K ++V IP   L  +TGVSGSGK+T++ + L PAL  + +G  + E  
Sbjct: 606 KILINGARENNLKNINVQIPLNTLTVITGVSGSGKSTLIKKVLYPAL-GKILGTVIDETG 664

Query: 566 RELEAEG----IHRANLIDATPIGANVRSTVATYADIHDELRRAFARCDAAKTGGWKAGD 621
           +  + EG    I +   +D  PIG + RS   TY   +D +R  FA    AK  G+K   
Sbjct: 665 KFDKLEGDYKSISQVEFVDQNPIGKSSRSNPVTYVKAYDAIRSLFADQPVAKQRGYKPAF 724

Query: 622 FSYNTGRLRCPTCDGTGSISLDVQFLPDVTIECPDCGGSRYASEAGAIRRAVKGESHLSL 681
           FS+N    RC  C G G+  +++QF+ D+ + C  C G R+ +E       +   ++   
Sbjct: 725 FSFNVDGGRCEACQGEGTQKIEMQFMADIFLTCESCKGKRFKNE-------ILDITYKDK 777

Query: 682 SLPQLMAMSVDQALAVTHDLKKVHARLTTLHDLGLGYLTLGEPTPALSGGEAQRLKLASE 741
           ++  ++ M++D+A+        + +RL  L ++GLGY+ LG+ +  LSGGEAQR+KLAS 
Sbjct: 778 NIADVLEMTIDEAMEFFQGKNAIISRLQPLQEVGLGYIGLGQSSNTLSGGEAQRVKLASF 837

Query: 742 MG----KAQSDAVFVFDEPTIGLHPLDVRVLLGVFDRLVASGATVVVIEHDLDVIANADW 797
           +G    KA+   +F+FDEPT GLH  D++ LL   + L+  G +V++IEH+ +VI +ADW
Sbjct: 838 LGKGGNKAKDHVLFIFDEPTTGLHFHDIKKLLYSINALIEEGHSVIIIEHNTEVIKSADW 897

Query: 798 IIDMGPGGGESGGRIVATGTPEQVAANPSSITGRYL 833
           +ID+GP GGE GG +   GTPE +     + T +YL
Sbjct: 898 VIDLGPEGGERGGNVTFEGTPEALREVKDNYTAKYL 933



 Score =  106 bits (264), Expect = 7e-27
 Identities = 55/121 (45%), Positives = 80/121 (66%)

Query: 10  IEVRGARVHNLKNIDIDIPLGELVGVAGVSGSGKSSLALGVLYAEGSRRYLEALSTYTRR 69
           I ++ ARV+NLKN+ + IP  +LV V G+SGSGKSSLA   L+AEG R Y+E+LS+Y R+
Sbjct: 21  IIIKNARVNNLKNLSVAIPRNKLVVVTGLSGSGKSSLAFDTLFAEGQRMYVESLSSYARQ 80

Query: 70  RLTQASRAQVDEVLHVPAALALHQRPTVPGIRSTFGTMTELLNSLRLLFSRVASHVCPHC 129
            L +  +  V+ +  V  A+A+ Q+ +    RST GT TE+ + L+LLFSR+   + P  
Sbjct: 81  FLGRMEKPDVEYIKGVSPAIAIQQKVSTKNPRSTVGTTTEIYDYLKLLFSRIGRTISPVS 140

Query: 130 G 130
           G
Sbjct: 141 G 141



 Score = 97.4 bits (241), Expect = 3e-24
 Identities = 57/198 (28%), Positives = 103/198 (52%), Gaps = 20/198 (10%)

Query: 296 CADCGGTRLSAAARAPHVRGLNLAEASAMTLDTAVDWVRGVPESLPADMRPMATNICESF 355
           C  C G R          +  N+A+   MT+D A+++ +G                  + 
Sbjct: 757 CESCKGKRFKNEILDITYKDKNIADVLEMTIDEAMEFFQGK----------------NAI 800

Query: 356 LNVARRLLDLGLGYLALDRAGATLSTGERQRVQLA----RAVRNRTTGVLYVLDEPSIGL 411
           ++  + L ++GLGY+ L ++  TLS GE QRV+LA    +        VL++ DEP+ GL
Sbjct: 801 ISRLQPLQEVGLGYIGLGQSSNTLSGGEAQRVKLASFLGKGGNKAKDHVLFIFDEPTTGL 860

Query: 412 HPSNVDGLLGVMRDLVADGNSVVVVDHDVRVLKAAGHLIEMGPVAGAEGGHVIAQGTVDE 471
           H  ++  LL  +  L+ +G+SV++++H+  V+K+A  +I++GP  G  GG+V  +GT + 
Sbjct: 861 HFHDIKKLLYSINALIEEGHSVIIIEHNTEVIKSADWVIDLGPEGGERGGNVTFEGTPEA 920

Query: 472 VAANPSSRIAPFLADNVS 489
           +     +  A +L ++ S
Sbjct: 921 LREVKDNYTAKYLRESFS 938



 Score = 52.8 bits (125), Expect = 9e-11
 Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 11/113 (9%)

Query: 506 HIRMTTSQLHTVKPLDVDIPRGRLVAVTGVSGSGKTTMVLESLIPALKAQAVGERLPEHV 565
           +I +  ++++ +K L V IPR +LV VTG+SGSGK+++  ++L    +   V E L  + 
Sbjct: 20  YIIIKNARVNNLKNLSVAIPRNKLVVVTGLSGSGKSSLAFDTLFAEGQRMYV-ESLSSYA 78

Query: 566 REL----------EAEGIHRANLIDATPIGANVRSTVATYADIHDELRRAFAR 608
           R+             +G+  A  I       N RSTV T  +I+D L+  F+R
Sbjct: 79  RQFLGRMEKPDVEYIKGVSPAIAIQQKVSTKNPRSTVGTTTEIYDYLKLLFSR 131



 Score = 50.4 bits (119), Expect = 5e-10
 Identities = 25/43 (58%), Positives = 31/43 (72%)

Query: 10  IEVRGARVHNLKNIDIDIPLGELVGVAGVSGSGKSSLALGVLY 52
           I + GAR +NLKNI++ IPL  L  + GVSGSGKS+L   VLY
Sbjct: 607 ILINGARENNLKNINVQIPLNTLTVITGVSGSGKSTLIKKVLY 649