Pairwise Alignments

Query, 328 a.a., LacI family DNA-binding transcriptional regulator from Bifidobacterium breve UCC2003

Subject, 360 a.a., transcriptional repressor of the lac operon (VIMSS) from Escherichia coli BW25113

 Score =  135 bits (339), Expect = 2e-36
 Identities = 95/323 (29%), Positives = 162/323 (50%), Gaps = 4/323 (1%)

Query: 1   MQDVAKAAGVSPQTVSRVANDSNAVKPETRQRVEAAMERLGYRPNYAARALKHGRFQDIG 60
           + DVA+ AGVS QTVSRV N ++ V  +TR++VEAAM  L Y PN  A+ L   +   IG
Sbjct: 6   LYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAELNYIPNRVAQQLAGKQSLLIG 65

Query: 61  VVMFDTTRFGNARILDSIVTHAAEDGYSVTIQTMSNGAERTLASAIDRMQRQPVDGVIVV 120
           V          ++I+ +I + A + G SV +  +         +A+  +  Q V G+I+ 
Sbjct: 66  VATSSLALHAPSQIVAAIKSRADQLGASVVVSMVERSGVEACKAAVHNLLAQRVSGLIIN 125

Query: 121 LEERISDFVGYKPP-RELPVVLISEAAADHCPTVDADQYGCSTAIVDYLMSKGHKTVYHI 179
                 D +  +     +P + +  +      ++       +   V++L++ GH+ +  +
Sbjct: 126 YPLDDQDAIAVEAACTNVPALFLDVSDQTPINSIIFSHEDGTRLGVEHLVALGHQQIALL 185

Query: 180 AGPVTSRAAESRAQGWREALEQIGARVPSMYIGDWCADSGYQAGVALAHDPEC-TAIYAA 238
           AGP++S +A  R  GW + L +   +  +   GDW A SG+Q  + + ++    TA+  A
Sbjct: 186 AGPLSSVSARLRLAGWHKYLTRNQIQPIAEREGDWSAMSGFQQTMQMLNEGIVPTAMLVA 245

Query: 239 NDQMAYGAMLGLESAGKRVPEDVSIVGVDDSLVDVVPRLNLTTMRMRNDAIGATAFSMVR 298
           NDQMA GAM  +  +G RV  D+S+VG DD+         LTT++     +G T+   + 
Sbjct: 246 NDQMALGAMRAITESGLRVGADISVVGYDDTEDSSCYIPPLTTIKQDFRLLGQTSVDRLL 305

Query: 299 RQCEGEKVPAGIKTVIPTELIKR 321
           +  +G+ V      ++P  L+KR
Sbjct: 306 QLSQGQAVKG--NQLLPVSLVKR 326