Pairwise Alignments

Query, 315 a.a., carbohydrate ABC transporter permease from Bifidobacterium breve UCC2003

Subject, 278 a.a., sugar ABC transporter permease from Agrobacterium fabrum C58

 Score =  159 bits (403), Expect = 6e-44
 Identities = 91/283 (32%), Positives = 156/283 (55%), Gaps = 13/283 (4%)

Query: 40  MTSEGRKPGWGSYAI---LIVTLLIFVFPLYYALSIASQNTPSNQYGVRA----LIPGTA 92
           M S+ R   W   A+   L    +I++FPL+     ++       YG+ +    L+P T 
Sbjct: 1   MRSKSRSLFWQKMALHATLTPLAIIWLFPLWMMFVFSTMP----DYGIFSPDIVLVPSTN 56

Query: 93  LLHNLSRALGELKFWQALGGTVTVAVVVSVSTVFFSTLAGYSFAKLHFRGRSVLLTAVVA 152
            + NLS    +  F +A+  ++TVAV+ +V +VF +++AG++ A+  F GR V++  ++ 
Sbjct: 57  FMENLSNLQADTNFLRAMFISITVAVIYTVLSVFLTSMAGWALARYRFAGRRVVIAIILG 116

Query: 153 TMTIPQQLTVVPLYIM-ANKAGLYGNLLAVIIPGLVSAFGVFWMTQYITDALPYELIEAA 211
           T+T+P  + V+P +IM A +  L    +A+I+P L ++ GV +M Q  +  +P EL +AA
Sbjct: 117 TITLPFAVVVIPQFIMVAREFKLANTWIALIVPPLFNSLGVLFMRQSFS-MMPTELFDAA 175

Query: 212 RVDGCSMFRTFISVGVPAARPAASMLFLFTFIGQWTNYFWPMLVLGANKSYMLTTAAAAL 271
           RV+G   ++ F+ + +P ARP  + L +  F+  W NY WP+L+           A   L
Sbjct: 176 RVEGVKEWQIFLRIALPLARPTMAALSIILFLASWNNYLWPLLINSRPGMMTAPVALGTL 235

Query: 272 KGAYFTDYTIVMSGVILTTAPLLLLFFVAGKQLVAGIMAGAVK 314
            G     +  +M+G +L TAP+L++F    +  +AGI AGAVK
Sbjct: 236 IGLTKVSWGGIMAGAVLLTAPILVVFVALQRHFIAGISAGAVK 278