Pairwise Alignments

Query, 896 a.a., DNA gyrase subunit A from Bifidobacterium breve UCC2003

Subject, 883 a.a., DNA gyrase subunit A (EC 5.99.1.3) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  720 bits (1858), Expect = 0.0
 Identities = 399/885 (45%), Positives = 554/885 (62%), Gaps = 71/885 (8%)

Query: 46  LQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNKCSRVVGD 105
           L++EMR SYL YA+SVIV RALPD RDG+KPVHRR +YAM++     +R + K +R+VGD
Sbjct: 13  LEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRALYAMHEQNNDWNRPFRKSARIVGD 72

Query: 106 VMGKYHPHGDSAIYDTLVRMAQSWSMRNLLVDGQGNFGSPGDDPAAAMRYTECRMAPLAM 165
           VMGKYHPHGDSAIYDT+VRMAQ +S+R++LVDGQGNFGS   D AAAMRYTE R+  +A 
Sbjct: 73  VMGKYHPHGDSAIYDTIVRMAQPFSLRHMLVDGQGNFGSVDGDNAAAMRYTEVRLTKIAH 132

Query: 166 EMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNMREVAE 225
           EM+ DIDK+TVDF+PNYDG  QEP+VLP+R PNLLVNGSAGIAVGMATNIPPHN+ EV +
Sbjct: 133 EMLNDIDKETVDFIPNYDGSLQEPSVLPSRLPNLLVNGSAGIAVGMATNIPPHNLNEVVD 192

Query: 226 GVHWALEHPDASREELLENLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLITMRAVVNT 285
                L+ P+A+ +EL+E    I+  PDFPT   I G  G++  YRTGRG + MRA  + 
Sbjct: 193 ACLHLLKAPEATIDELME----IVPAPDFPTAGIIYGINGVKDGYRTGRGRVVMRAKCHF 248

Query: 286 EEIN--GRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQRLVLVL 343
           E+I+   R  ++V ELPYQVN   L   I E V + KI+GI+ ++DE S ++G RLV+ L
Sbjct: 249 EDIDRGQRQAIIVDELPYQVNKKTLQERIAELVHEKKIEGISHIQDE-SDKSGMRLVIEL 307

Query: 344 KRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQLDVIARRTA 403
           KR  VP+VVLNNLYK +QLQ TFG NM+ALVDG PR  +L   I+ ++ H+ +V+ RRT 
Sbjct: 308 KRGEVPEVVLNNLYKQTQLQDTFGINMVALVDGQPRLCNLKDLIQVFLEHRREVVTRRTV 367

Query: 404 YLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLME--------------- 448
           +  R+A ER H+L+G   AL  +DE I +IR S     A+  LM                
Sbjct: 368 FNLRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMTRQWDSQLVREMLTRA 427

Query: 449 ---------------------------LLDIDQVQADAILAMQLRTLTRMNRDKIVAEHE 481
                                      L  + + QA  +L M+L+ LT + +DKIVAE++
Sbjct: 428 RADGGVVNADDYRPEGLEREFGMSSDGLYRLSETQAQEVLQMRLQRLTGLEQDKIVAEYK 487

Query: 482 ELQRKIADYIDILAKPERQRKIIGDELDEIVGKYGD----ERRTKILPFSGEMNVEDLIA 537
           E+  +I D +DILAKP R   II DEL  +  ++G      RR++I   + ++  EDLI 
Sbjct: 488 EVMAEIDDLLDILAKPARVSTIISDELTLLKQEFGQTKLGARRSEIEHNAQDLATEDLIT 547

Query: 538 EENVVVTVTHSGFIKRTKADEYRAQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTN 597
             ++VVT++HSG+IK     EYR+Q RGG+G + T  +EDD +D  F+ +TH+++L F+N
Sbjct: 548 PTDMVVTLSHSGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFIANTHDYILCFSN 607

Query: 598 KGRVYRIKAYELPEGSRDSKGQHVANLLQFAPDESIQAVLSIP----NYEVAKYLVLATR 653
           +GR+Y +K +E+P GSR S+G+ + N+      E I  VL +     ++   +Y+ +AT 
Sbjct: 608 RGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVVLPLTGEMRSFPSDRYVFMATS 667

Query: 654 SGKVKKTPLAEYDSPRQGGLIAVRLMADENGENADELIGAALCNAEDDIILVSKLGMSLK 713
            G VKKT L E+ +PR+ G+IAV L      +  D LIGAAL + + D++L S  G +++
Sbjct: 668 MGTVKKTALDEFSNPRKAGIIAVDL------DEGDFLIGAALTDGQHDVMLFSDGGKAVR 721

Query: 714 FQANDEQLRPMGRQTAGVQGMKFREGDELLAMDVVWGDSDKDLFVVTNEGFAKRTAISEY 773
           F  ND  +RPMGR   GV+GM   +   ++AM +V  D ++ +   T  G+ KRT I+EY
Sbjct: 722 FDEND--VRPMGRNARGVRGMLIEDTQSVIAM-LVAEDEEQSVLTATINGYGKRTPIAEY 778

Query: 774 RLQGRNGLGIKAVQLVEGRGSLVGALVVSEDDQVMAIMKSGKVIRSNVDEVKRTGRNTQG 833
              GR   G+ A+Q  E  G +V A +V  DD++M I   G ++R+ V E++  GR TQG
Sbjct: 779 TRHGRGTKGMIAIQQSERNGKVVAATLVHNDDEIMLITDKGVLVRTRVSEIREMGRATQG 838

Query: 834 VTFAKPDKGDEILSIARNEEKDDPEEEVADNGTA-----EAGQSP 873
           VT    D+G E+  + R  E D    E+ D+  A     +AG  P
Sbjct: 839 VTLIALDEGAELSGLQRIVENDANVPELGDDANAADAADDAGTEP 883