Pairwise Alignments

Query, 696 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit B from Bifidobacterium breve UCC2003

Subject, 805 a.a., DNA gyrase subunit B from Pseudomonas simiae WCS417

 Score =  494 bits (1271), Expect = e-144
 Identities = 268/559 (47%), Positives = 361/559 (64%), Gaps = 28/559 (5%)

Query: 37  YEASDLRVLEGLEAVRIRPGMYIGSTGP-RGLHHLVYEIVDNSVDEALAGYASHIEVTIL 95
           Y+++ ++VL+GL+AVR RPGMYIG T    GLHH+V+E+VDNS+DEALAG+   I + I 
Sbjct: 7   YDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISIIIH 66

Query: 96  PDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVN 155
           PD  I V D+GRGIPVD    EGVS  E +MT LHAGGKF    Y VSGGLHGVG+SVVN
Sbjct: 67  PDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 126

Query: 156 ALSTHVDIEVRRQGFHWTQTYVDQHPVAPLKQGEPMAEDESTGTSVTFWADPKIFETTIY 215
           ALS  + + VRR G  W QTYV   P  P+K    + + E+TGT + F    + F+   +
Sbjct: 127 ALSEELILTVRRSGKIWEQTYVHGVPKEPMKI---VGDSETTGTQIHFKPSAETFKNIHF 183

Query: 216 DFETLRSRFQQMAFLNKGLKLSLTDERVTDQAGDEVAGDAEGEPGEKHQTVTYQYLNGIK 275
            ++ L  R ++++FLN G+ + L DER         +G  E           ++Y  G++
Sbjct: 184 SWDILAKRIRELSFLNSGVGIVLKDER---------SGKEE----------LFKYEGGLR 224

Query: 276 DYVDYLVKVRKATPVEEDVISFEAEDLKLGISAELAMQWTTAYSEAVHTFANTISTTEGG 335
            +V+YL    K    +    + + ED   GI  E+A+QW  +++E +  F N I   +GG
Sbjct: 225 AFVEYL-NTNKTAVNQVFHFNIQRED---GIGVEIALQWNDSFNENLLCFTNNIPQRDGG 280

Query: 336 THEEGFRAALTSLVNRYARDKAILKDKDENLSGDDVREGLTAVISVKLTNPQFEGQTKTK 395
           TH  GFR+ALT  +N Y   + + K      +GDD REGLTA+ISVK+ +P+F  QTK K
Sbjct: 281 THLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDK 340

Query: 396 LGNSEAKTFVQRVMTDKLGDWFDAHPAEAKNIIQKAIEASRARLAAKKARENTRRKSIFE 455
           L +SE KT V++ M     D+   +P EAK ++ K I+A+RAR AA+KARE TRRK   +
Sbjct: 341 LVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALD 400

Query: 456 SAGMPDKLKDCQSSNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILNTERASLD 515
            AG+P KL DCQ  +P   EL++VEGDSAGGSA QGRN  TQAILPL+GKILN E+A  D
Sbjct: 401 IAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFD 460

Query: 516 RMMKSDTIESLITAVGGGYGED-FDISKVRYHKVIIMADADVDGAHIATLNLTLFFRYMR 574
           +M+ S  + +LITA+G G G D ++I K+RYH +IIM DADVDG+HI TL LT FFR + 
Sbjct: 461 KMISSQEVGTLITALGCGIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLP 520

Query: 575 PMITAGYVYVAMPPLYRLK 593
            +I  GY+Y+A PPLY++K
Sbjct: 521 ELIERGYIYIAQPPLYKVK 539



 Score = 84.0 bits (206), Expect = 3e-20
 Identities = 43/72 (59%), Positives = 51/72 (70%)

Query: 624 KGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIEDAAAADETFSMLMGDEVEPRRLF 683
           K   IQRYKGLGEM+  +LWETTMDP  R + +V IEDA  AD+ F+ LMGD VEPRR F
Sbjct: 733 KRHTIQRYKGLGEMNPDQLWETTMDPAQRRMLRVTIEDAIGADQIFNTLMGDAVEPRRDF 792

Query: 684 IQRNAKNVRWID 695
           I+ NA  V  +D
Sbjct: 793 IESNALAVSNLD 804