Pairwise Alignments

Query, 696 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit B from Bifidobacterium breve UCC2003

Subject, 823 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit B from Paraburkholderia sabiae LMG 24235

 Score =  484 bits (1246), Expect = e-141
 Identities = 280/629 (44%), Positives = 386/629 (61%), Gaps = 41/629 (6%)

Query: 27  ELDESMAPEHYEASDLRVLEGLEAVRIRPGMYIGSTGP-RGLHHLVYEIVDNSVDEALAG 85
           + + S     Y AS +++LEGLEAVR RPGMYIG T    GLHHLV+E++DNS+DEALAG
Sbjct: 3   DTNNSQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAG 62

Query: 86  YASHIEVTILPDNGIRVVDDGRGIPV----DEVPGEGVSGVETVMTKLHAGGKFGGGGYA 141
           +   I+V I  DN I V D+GRGIP     D+      S  E VMT+LHAGGKF    Y 
Sbjct: 63  HCDDIQVIIHADNSISVTDNGRGIPTGVKRDDKHDPKRSAAEIVMTELHAGGKFDQNSYK 122

Query: 142 VSGGLHGVGISVVNALSTHVDIEVRRQGF-HWTQTY--VDQHPVAPLKQGEPMA------ 192
           VSGGLHGVG+S VNALS+ + + VRR G  H+ + +  V Q+ V     GE ++      
Sbjct: 123 VSGGLHGVGVSCVNALSSWLRLTVRRDGKKHFMEFHRGVPQNRVIEEMGGERLSPIQVVG 182

Query: 193 EDESTGTSVTFWADPKIFETTIYDFETLRSRFQQMAFLNKGLKLSLTDERVTDQAGDEVA 252
           + E+ GT V F AD  IF    Y ++ L  R ++++FLN G+++ LTD+R         +
Sbjct: 183 DTENRGTEVHFMADDTIFGNVEYHYDILAKRIRELSFLNNGVRIRLTDQR---------S 233

Query: 253 GDAEGEPGEKHQTVTYQYLNGIKDYVDYLVKVRKATPVEEDVISFEAEDLKLGISAELAM 312
           G  E           + ++ G+K +V+Y+ K +    +   +     E  K G+  E+AM
Sbjct: 234 GKEED----------FAFVGGVKGFVEYINKTKSV--LHPTIFHIVGE--KDGVGVEVAM 279

Query: 313 QWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYARDKAILKDKDENLSGDDVR 372
           QW  +Y+E V  F N I   +GGTH  G RAA+T ++N+Y  D  I K      SGDD+R
Sbjct: 280 QWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIVDHEIAKKAKVETSGDDMR 339

Query: 373 EGLTAVISVKLTNPQFEGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPAEAKNIIQKAI 432
           EGL+ V+SVK+  P+F  QTK KL +SE +  V+ V+   L ++    P +AK I  K +
Sbjct: 340 EGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIV 399

Query: 433 EASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSSNPEECELFIVEGDSAGGSAIQGR 492
           +A+RAR AA+KARE TRRK + +  G+P KL DCQ  +P + E++IVEGDSAGGSA QGR
Sbjct: 400 DAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGR 459

Query: 493 NPITQAILPLRGKILNTERASLDRMMKSDTIESLITAVGGGYG-EDFDISKVRYHKVIIM 551
           +   QAILPLRGK+LN E+A  D+++ S+ I +LITA+G G G ED+++ K+RYH++IIM
Sbjct: 460 DRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLITALGCGIGKEDYNLDKLRYHRIIIM 519

Query: 552 ADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRV 611
            DADVDGAHI TL LT F+R M  MI  GY+Y+A PPLY++K  K    ++   AE +  
Sbjct: 520 TDADVDGAHIRTLLLTFFYRQMPEMIERGYIYIAQPPLYKVKAGKDER-YLKDTAELNAH 578

Query: 612 LAEGKANGRQLPKGEGIQRYKG--LGEMS 638
           +     NG +L   EG     G  LGE++
Sbjct: 579 MLRLALNGSELIASEGATPIAGDALGELA 607



 Score = 85.1 bits (209), Expect = 1e-20
 Identities = 44/67 (65%), Positives = 49/67 (73%)

Query: 629 QRYKGLGEMSYQELWETTMDPEHRILKQVHIEDAAAADETFSMLMGDEVEPRRLFIQRNA 688
           QRYKGLGEM+  +LWETTMDP  R L +V IEDA AAD  F+ LMGDEVEPRR FI+ NA
Sbjct: 756 QRYKGLGEMNPGQLWETTMDPSVRRLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIESNA 815

Query: 689 KNVRWID 695
                ID
Sbjct: 816 LRAGNID 822