Pairwise Alignments

Query, 641 a.a., DNA packaging protein from Escherichia coli BL21

Subject, 649 a.a., phage terminase large subunit (GpA) from Phaeobacter inhibens DSM 17395

 Score =  221 bits (564), Expect = 6e-62
 Identities = 176/603 (29%), Positives = 274/603 (45%), Gaps = 60/603 (9%)

Query: 20  RSLFRPEPQTAV-EWADANYYLPKESAYQEG-RWETLPFQRAIMNAMGSDYIREVNVVKS 77
           ++  RP P     EWA+ N  +P  +A     R++  P+QR +++   +     ++++  
Sbjct: 21  QAFLRPPPDLKPSEWAEQNIKIPIGNAVPGPMRFDNAPYQREVIDMTANPRCNRISLMWG 80

Query: 78  ARVGYSKMLLGVYAYFIEHKQRNTLIWLPTDGDAENFMKTHVEPTIRDIPSLLALAPWYG 137
           A+VG ++  L   A+ I     + ++  P+ GD   +++T   P I     L  +     
Sbjct: 81  AQVGKTQTALAAQAFRIGFNPVSQMMMQPSQGDLTTWLETKFNPLIEGNEDLAEVIAKPR 140

Query: 138 KKHRDNTLTMKRFTNGRGFWCLGGKAAKNYREKSVDVAGYDELAAFDDDIEQEGSPTFL- 196
            +H  N   MK +  G   +   G + K  R +S      DE   +D     EG P  L 
Sbjct: 141 ARHGVNNQRMKSYPGGFLMFSWSG-SPKTMRGRSAPFIICDETDGYDRT--SEGHPVSLL 197

Query: 197 -------GDKRIEGSVWPKSIRGSTPKVRGTCQIERAASESPHFMRFHVACPHCGEEQYL 249
                  GD+R+   +       STP ++G   IE+A  +      F+V CPHCG  Q L
Sbjct: 198 WQRAATFGDQRLLLEI-------STPTIKGGSWIEKAFEQGDQ-RYFYVRCPHCGHLQKL 249

Query: 250 KFGDKETPFGLKWTPDD-----PSSVFYLCEHNACVIRQQELDFTDARYICEKTGIWTRD 304
           ++   +      W  D      P +  YLC  + C     + +   A    E      R+
Sbjct: 250 QWSQVD------WNKDAEGVNLPETAGYLCAGDGCGTVWNDGERVAAIRNAE------RE 297

Query: 305 GILWFSSSGEEIEPPDSVTFHIWTAYSPFTTWVQIVKDWMKTKGDTGKRKTFVNTTLGET 364
           G  W  +           +FH+   YS F     IV+ ++  +   G  +TFVN +L ET
Sbjct: 298 GGGWIGTKAFR----GHASFHLSELYSCFRRLEDIVQSFLDKRA-AGDLQTFVNVSLAET 352

Query: 365 WEAKIGERPDAEVMAERKEHYSAPVPDRVAYLTAGIDSQLDRYEMRVWGWGPGEESWLID 424
           WE + G++ +A  +  R + ++APVP     LTAGID Q DR E+ +  WG GEESW +D
Sbjct: 353 WEEE-GDKLEASALMARAKEFTAPVPMGAGVLTAGIDMQNDRLEVEIVAWGLGEESWSVD 411

Query: 425 RQIIMGRHDDEQTLLRVDEAINKTYTRRNGAEMSISRICWDTGGID--PTIVYERSKKHG 482
            +++ G    +     +D  + +T+   +G ++ IS  C DTGG        Y+ ++K  
Sbjct: 412 YRVLWGDPLQQDVWDELDALLAETWGHESGTDLRISAACMDTGGEGGRTQAAYDYARKRL 471

Query: 483 LFRVIPIKGASVYGKPVASMPRKRNKNG---VYLTEIGTDTAKEQIYNRFTLTPEGDEPL 539
             +V  IKG   +G+P+ + P K  + G   VYL  IG D AK  +  R  +T    EP 
Sbjct: 472 GRKVWAIKGVGGWGRPIVTQPSKVKQRGVRPVYLHSIGVDEAKVVVAQRARIT----EPG 527

Query: 540 PGAVHFP--NNPDIFDLTEAQQLTAEEQVEKWVDGRKKILWDSKKRRNEALDCFVYALAA 597
           PG  HFP   +P  FD+      TAE    ++V G     W + + RNEA DC VYA AA
Sbjct: 528 PGHCHFPTGRDPAWFDM-----FTAEALRTRYVKGFAVREWHNVRPRNEAFDCRVYAYAA 582

Query: 598 LRI 600
           L I
Sbjct: 583 LSI 585