Pairwise Alignments

Query, 512 a.a., cadBA operon transcriptional activator from Escherichia coli BL21

Subject, 519 a.a., transcriptional regulator CadC from Vibrio cholerae E7946 ATCC 55056

 Score =  161 bits (408), Expect = 5e-44
 Identities = 134/508 (26%), Positives = 243/508 (47%), Gaps = 30/508 (5%)

Query: 7   RVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNH 66
           ++ +W++    N++ R  R+++ EPRLI+LL F A+H+GEV  R+ELI +VW  +IVT+ 
Sbjct: 7   QINDWVLCIDENKLYRQDREVSAEPRLINLLHFLAEHAGEVFGREELIQHVWDGAIVTDQ 66

Query: 67  VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV--------PVIWYSEEE--GEEIM 116
           VVTQSI ELRK L+D  E++  Y+ TVPKRGYKL+         P +   EE    +  +
Sbjct: 67  VVTQSIFELRKLLRDGREENLSYVVTVPKRGYKLVANVQRLDGNPYVSRQEESTASDVCL 126

Query: 117 LSSPPPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALV 176
                 + +AVP    P+  L     A    Q P KS +      W   LL+  I + LV
Sbjct: 127 ADDIDDVEDAVPEIVFPAGPL---TRAVCQSQQPKKSSK-PNVSRWRLNLLN-AIWIGLV 181

Query: 177 AFSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSY--AIGVGDLVATSLNTF 234
             +     +  S+ RI    + +D +++            L++  A G+   +   L   
Sbjct: 182 IVAMGFFTVQQSQVRI---TQVVDTHLIEFKFQDGFHAQALTHELADGIAQKLMADLTQV 238

Query: 235 STF-MVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYV 293
           S + ++  K  Y+       GK++ +   +Q  +     F+ ++L +N+  + +  ++Y 
Sbjct: 239 SDYRVILGKTAYS--SGILPGKSIMVRVNDQDGHE----FLDLELKNNSSDAVLFSRQYP 292

Query: 294 ITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQQILPHRGALLTNFYQAHDYLLHGDDK 353
           + + +  ++       + +AL  P  ++  + L    P + A L  + +A+ YL   D  
Sbjct: 293 LDSQHLASVLKSAEWDVMQALKIPNAEQQAQRLLVDFPRQPAALGLYVRANHYLNVADRP 352

Query: 354 SLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHP---LDEKQLAALNTEIDNIVTL 410
              +   LL ++++  P+  Y +AE  +   V+ +  P   L++ ++  L+ ++  +   
Sbjct: 353 QFQKGIYLLEQVLKLEPDNHYVQAELLIAYHVQQAISPDQALNQDRMLVLSEQLQQVSYS 412

Query: 411 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAA 470
           P+      IY+  A+ A V+ + + +   +     L  S L+YVL GK  E+KG    A+
Sbjct: 413 PQAVVQPRIYEALALQATVENQVETATHYLAQAQGLRESVLSYVLQGKHAELKGDLDGAS 472

Query: 471 DAYLTAFNLRPGANTLYWIENGIFQTSV 498
           DAY  AF +     T    EN +F +++
Sbjct: 473 DAYSEAFYMDTSLETYLLCENLVFHSNL 500