Pairwise Alignments

Query, 940 a.a., ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC from Escherichia coli BL21

Subject, 1022 a.a., Excinuclease ABC subunit A from Xanthomonas campestris pv. campestris strain 8004

 Score = 1375 bits (3558), Expect = 0.0
 Identities = 671/940 (71%), Positives = 793/940 (84%), Gaps = 1/940 (0%)

Query: 1   MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
           MD I +RGARTHNLKNI+L +PRDKLIV+TGLSGSGKSSLAFDT+YAEGQRRYVESLSAY
Sbjct: 37  MDFIRIRGARTHNLKNIDLDLPRDKLIVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAY 96

Query: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC 120
           ARQFLS+MEKPD+DHIEGLSPAISIEQKSTSHNPRSTVGTITEI+DYLRLL+ARVG+PRC
Sbjct: 97  ARQFLSVMEKPDLDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGQPRC 156

Query: 121 PDHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARID 180
           PDH  PL AQTVSQMVD++L+    +R MLLAP+I++RKGEH +  E L +QG++R R+D
Sbjct: 157 PDHGFPLEAQTVSQMVDHMLTLDPEQRYMLLAPVIRDRKGEHAQVFEQLRAQGFVRVRVD 216

Query: 181 GEVCDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLAESFETALELSGGTAVVADMDDP 240
           GE+ ++   P L L++KHTIE V+DRF+ R+D+ QRLAESFETAL+L  G   V  +DD 
Sbjct: 217 GELYEIDAVPPLALRQKHTIEAVIDRFRPREDIKQRLAESFETALKLGEGMVAVQSLDDA 276

Query: 241 KAEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQNPEL 300
            A   LFS+ ++CP+C YS+ ELEPRLFSFN P GACP+CDGLGV ++FDPDRV+ +PEL
Sbjct: 277 TAAPHLFSSKYSCPVCDYSLPELEPRLFSFNAPVGACPSCDGLGVAEFFDPDRVVVHPEL 336

Query: 301 SLAGGAIRGWDRRNFYYFQMLKSLADHYKFDVEAPWGSLSANVHKVVLYGSGKENIEFKY 360
           SL+ GA+RGWDRRN YYFQ++ SLA HYKFDV+A W +L A V + VL+GSG E I F Y
Sbjct: 337 SLSAGAVRGWDRRNAYYFQLIASLAKHYKFDVDAVWNTLPAKVRQAVLFGSGDEVISFTY 396

Query: 361 MNDRGDTSIRRHPFEGVLHNMERRYKETESSAVREELAKFISNRPCASCEGTRLRREARH 420
             D G  + R+H FEG+L N+ERRY+ETES AVREEL K++S +PC +C GTRL R AR+
Sbjct: 397 FTDAGGRTTRKHRFEGILPNLERRYRETESPAVREELTKYVSQQPCPACNGTRLNRAARN 456

Query: 421 VYVENTPLPAISDMSIGHAMEFFNNLKLAGQRAKIAEKILKEIGDRLKFLVNVGLNYLTL 480
           V+V + PLP +  + +  A+ FF  L L G R +IA KI+KEIG+RL FLV+VGL+YLTL
Sbjct: 457 VFVADRPLPELVVLPVNEALNFFRGLSLPGWRGEIASKIVKEIGERLGFLVDVGLDYLTL 516

Query: 481 SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRDLGNT 540
            R A+TLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTL  LRDLGNT
Sbjct: 517 ERKADTLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLTRLRDLGNT 576

Query: 541 VIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIEV 600
           VIVVEHDEDAIR ADHV+DIGPGAGVHGGE+ A+G L+ I+  P SLTGQY+SGKR+IE+
Sbjct: 577 VIVVEHDEDAIRLADHVLDIGPGAGVHGGEICAQGTLQDILESPRSLTGQYLSGKRRIEI 636

Query: 601 PKKRVPANPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQR 660
           PK+R   NP+ +L L GA GNNLK+V L +P GL TCITGVSGSGKSTLINDTLF +A  
Sbjct: 637 PKQRHKPNPKMMLHLRGATGNNLKNVDLEIPAGLLTCITGVSGSGKSTLINDTLFTLAAN 696

Query: 661 QLNGATIAEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTSVRELFAGVPE 720
           ++NGA+    AP+R+++ L+ FDKV+DIDQSPIGRTPRSNPATYTG+FT +RELFA VPE
Sbjct: 697 EINGAS-HTVAPHREVENLDLFDKVVDIDQSPIGRTPRSNPATYTGMFTPLRELFAQVPE 755

Query: 721 SRARGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKY 780
           SRARGY+PGRFSFNVRGGRCEACQGDG+IKVEMHFLPD+YVPCD C GKRYNRETLEI+Y
Sbjct: 756 SRARGYSPGRFSFNVRGGRCEACQGDGMIKVEMHFLPDVYVPCDVCHGKRYNRETLEIRY 815

Query: 781 KGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKL 840
           KG  I +VL MT+E+A   F+ VP++ARKL+TL+DVGL+YI+LGQSATTLSGGEAQRVKL
Sbjct: 816 KGFNISDVLQMTVEDALRLFEPVPSIARKLETLVDVGLSYIKLGQSATTLSGGEAQRVKL 875

Query: 841 ARELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHKLRDQGNTIVVIEHNLDVIKTADW 900
           ++ELS+R TG+TLYILDEPTTGLHF DI+ LL VLHKLRD+GNT+VVIEHNLDVIKTADW
Sbjct: 876 SKELSRRDTGRTLYILDEPTTGLHFHDIEALLGVLHKLRDEGNTVVVIEHNLDVIKTADW 935

Query: 901 IVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPML 940
           IVDLGPEGG  GG ILVSGTPE VA  +AS+T +FL  ML
Sbjct: 936 IVDLGPEGGHRGGTILVSGTPEDVAAHKASYTGQFLAKML 975