Pairwise Alignments

Query, 940 a.a., ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC from Escherichia coli BL21

Subject, 970 a.a., excinuclease ABC subunit UvrA from Synechocystis sp000284455 PCC 6803

 Score = 1038 bits (2684), Expect = 0.0
 Identities = 532/971 (54%), Positives = 693/971 (71%), Gaps = 39/971 (4%)

Query: 2   DKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYA 61
           + I +RGAR HNLKN+NL +PRD+LIV TG+SGSGKSSLAFDT++AEGQRRYVESLSAYA
Sbjct: 5   NSIRIRGARQHNLKNVNLDLPRDRLIVFTGVSGSGKSSLAFDTIFAEGQRRYVESLSAYA 64

Query: 62  RQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCP 121
           RQFL  ++KPDVD IEGLSPAISI+QKSTSHNPRSTVGT+TEI+DYLRLLF R G P CP
Sbjct: 65  RQFLGQLDKPDVDSIEGLSPAISIDQKSTSHNPRSTVGTVTEIYDYLRLLFGRAGSPHCP 124

Query: 122 DHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARIDG 181
                +A QT+ QM D V+  P+  +  +LAP++K +KG H + L +L SQG++R RI+G
Sbjct: 125 HCQRNIAPQTIDQMCDRVMELPDRTKFQILAPVVKGKKGTHVQLLSSLVSQGFVRVRING 184

Query: 182 EVCDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLAESFETALELSGGTAVVADMDDPK 241
           EV +LSD  +L+  + HTIE+V+DR   ++ L +RL +S  T L+ + GTA++  +D P 
Sbjct: 185 EVRELSDNIELKKNQAHTIEIVIDRLIKKEGLQERLVDSLSTCLKQAEGTAIIDILDKPT 244

Query: 242 A----------------------------EELLFSANFACPICGYSMRELEPRLFSFNNP 273
                                        +E++FS NFACP  G  M EL PRLFSFN+P
Sbjct: 245 LAVLDGGKKDDKEALKAAENGQAYHAELPKEIIFSENFACPEHGAVMDELSPRLFSFNSP 304

Query: 274 AGACPTCDGLGVQQYFDPDRVIQNPELSLAGGAIRGWDRR-NFYYFQMLKSLADHYKFDV 332
            GACP C G+G  + F PD VI +PE  +   AI  W  + N YY  +L SL  H+ F +
Sbjct: 305 YGACPDCHGIGFVRSFCPDLVIPDPEKPVYV-AIAPWSEKDNSYYLSLLYSLGQHFDFQL 363

Query: 333 EAPWGSLSANVHKVVLYGSGKE---NIEFKYMNDRGDTSIRRHPFEGVLHNMERRYKETE 389
           + PW  L+    +++LYG+ +E     E +Y N +G    RR  F G L+ +++ Y ET 
Sbjct: 364 QTPWKKLTKEQKEIILYGTEEEIWFEGESRYRNKQG--YYRR--FAGALNILQKNYDETN 419

Query: 390 SSAVREELAKFISNRPCASCEGTRLRREARHVYVENTPLPAISDMSIGHAMEFFNNLKLA 449
           S A++++L K+I N+PC +C G RL+ EA  V +    +  ++ + I   +E   NL+L 
Sbjct: 420 SDAIKQKLEKYIINQPCHTCGGKRLKPEALAVKLGQYNINNLTSVPIRQTLERIENLELT 479

Query: 450 GQRAKIAEKILKEIGDRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGAGLVGVM 509
            ++A I E  LKEI  RL+FL++VGL+YLTL R+A TLSGGEAQRIRLA+QIG+GL GV+
Sbjct: 480 SRQAMIGELALKEIKARLQFLLDVGLDYLTLDRAAMTLSGGEAQRIRLATQIGSGLTGVL 539

Query: 510 YVLDEPSIGLHQRDNERLLGTLIHLRDLGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGG 569
           YVLDEPSIGLHQRDN RLL TL  LRDLGNT+IVVEHDED IR AD+++DIGP AG+HGG
Sbjct: 540 YVLDEPSIGLHQRDNNRLLATLTKLRDLGNTLIVVEHDEDTIRHADYIVDIGPKAGIHGG 599

Query: 570 EVVAEGPLEAIMAVPESLTGQYMSGKRKIEVPKKRVPANPEKVLKLTGARGNNLKDVTLT 629
           E+V +G  + ++    SLTG Y+SG+  I  P++R   N  K L L G   NNL+++ +T
Sbjct: 600 EIVCQGDFQTLLKNQRSLTGAYLSGREAIATPEERRNGNGAK-LTLQGCCHNNLRNIDVT 658

Query: 630 LPVGLFTCITGVSGSGKSTLINDTLFPIAQRQLNGATIAEPAPYRDIQGLEHFDKVIDID 689
           +P+G   C+TGVSGSGKSTL+N+ L P  Q  L+   +A P    +I GL+  DKVI ID
Sbjct: 659 IPLGKLVCVTGVSGSGKSTLVNELLHPALQHYLS-RQVAFPKNLGEITGLQAIDKVIVID 717

Query: 690 QSPIGRTPRSNPATYTGVFTSVRELFAGVPESRARGYTPGRFSFNVRGGRCEACQGDGVI 749
           QSPIGRTPRSNPATYTG+F S+RE+F    E++ARGY PG+FSFNV+GGRCEAC G GV 
Sbjct: 718 QSPIGRTPRSNPATYTGIFDSIREIFTQTIEAKARGYKPGQFSFNVKGGRCEACAGQGVN 777

Query: 750 KVEMHFLPDIYVPCDQCKGKRYNRETLEIKYKGKTIHEVLDMTIEEAREFFDAVPALARK 809
            +EM+FLPD+YV CD CKG RYNRETL++KYKG +I +VL MT EEA   F+ +P    +
Sbjct: 778 VIEMNFLPDVYVQCDVCKGARYNRETLQVKYKGHSIADVLAMTTEEALTVFENIPRAVNR 837

Query: 810 LQTLMDVGLTYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHFADIQ 869
           LQTL+DVGL YI+LGQ A TLSGGEAQRVKLA ELS+R TG+TLY++DEPTTGL F D+ 
Sbjct: 838 LQTLVDVGLGYIKLGQPAPTLSGGEAQRVKLASELSRRATGKTLYLIDEPTTGLSFYDVH 897

Query: 870 QLLDVLHKLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAECEA 929
            LL+VL +L D+GN+++VIEHNLDVI+ +DWI+DLGPEGG  GG+I+V+GTPETVA+  +
Sbjct: 898 HLLNVLQRLVDKGNSVLVIEHNLDVIRCSDWIIDLGPEGGDRGGKIMVAGTPETVAQHPS 957

Query: 930 SHTARFLKPML 940
           S+T ++L  +L
Sbjct: 958 SYTGKYLAKVL 968