Pairwise Alignments

Query, 940 a.a., ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC from Escherichia coli BL21

Subject, 1003 a.a., excinuclease ABC subunit A from Synechococcus elongatus PCC 7942

 Score = 1026 bits (2653), Expect = 0.0
 Identities = 532/975 (54%), Positives = 689/975 (70%), Gaps = 40/975 (4%)

Query: 2   DKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYA 61
           D+I VRGAR HNL+N++L +PR++LIV TG+SGSGKSSLAFDT++AEGQRRYVESLSAYA
Sbjct: 26  DQIRVRGARQHNLQNLDLDLPRNQLIVFTGVSGSGKSSLAFDTIFAEGQRRYVESLSAYA 85

Query: 62  RQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCP 121
           RQFL  ++KPDVD IEGLSPAISI+QKSTSHNPRSTVGT+TEI+DYLRLLF R G P CP
Sbjct: 86  RQFLGQVDKPDVDAIEGLSPAISIDQKSTSHNPRSTVGTVTEIYDYLRLLFGRAGAPHCP 145

Query: 122 DHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARIDG 181
             D  +A QT+ QMVD +   P+  R  +LAP+++ +KG H K L +LA++G++R RI+G
Sbjct: 146 HCDRSIAPQTIDQMVDRLAELPDRSRFQILAPVVRGKKGTHKKLLSSLAAEGFVRVRING 205

Query: 182 EVCDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLAESFETALELSGGTAVV------- 234
           EV +LSD  +L+    HTIE+VVDR   +  + +RL +S  T L  S G AV+       
Sbjct: 206 EVRELSDSIELDKNHAHTIEIVVDRLVQKAGIQERLVDSLTTCLRRSEGIAVIDVLPGDR 265

Query: 235 ---------------ADMD-----DPKAEELLFSANFACPICGYSMRELEPRLFSFNNPA 274
                          AD       +P+  EL+FS NFACP  G  M EL PRLFSFN+P 
Sbjct: 266 GNVITLPVEHHSSRAADTGAEYNREPQGYELVFSENFACPEHGAVMEELSPRLFSFNSPY 325

Query: 275 GACPTCDGLGVQQYFDPDRVIQNPELSLAGGAIRGWDRRNF-YYFQMLKSLADHYKFDVE 333
           GAC  C GLG  + F P+ V+ +P L +   AI  W  ++  YYF +L  +A+   F++ 
Sbjct: 326 GACSHCHGLGTLRTFSPELVVPDPNLPVYA-AIAPWSEKDHSYYFNLLCGVAEVSGFEIS 384

Query: 334 APWGSLSANVHKVVLYGSGKENIEFKYMNDRGDTSIRRHPFEGVLHNMERRYKETESSAV 393
             W  L+ +    +L+GS  E I  +  +   D  +   PFEGV+  +ER+Y+ET S   
Sbjct: 385 DRWQDLTPDQQHAILFGSS-EPIAVETDSRFRDRHLYHRPFEGVIPILERQYRETSSEVY 443

Query: 394 REELAKFISNRPCASCEGTRLRREARHVYVENTPLPAISDMSIGHAMEFFNNL------- 446
           +++L K++ ++ C  C G RL+ E+  V +    +  ++ +S+   +     L       
Sbjct: 444 KQKLEKYLVDQTCEVCHGLRLKPESLAVRMGPYRITDLTSVSVRECLNKIEALIGSDNRE 503

Query: 447 -KLAGQRAKIAEKILKEIGDRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGAGL 505
             L  ++ +I + +L+EI  RL+FL++VGL+YLTL R A TLSGGEAQRIRLA+QIGAGL
Sbjct: 504 PLLTARQMQIGDLVLREIQARLRFLLDVGLDYLTLDRPAMTLSGGEAQRIRLATQIGAGL 563

Query: 506 VGVMYVLDEPSIGLHQRDNERLLGTLIHLRDLGNTVIVVEHDEDAIRAADHVIDIGPGAG 565
            GV+YVLDEPSIGLHQRDN+RLL TLI LRDLGNT+IVVEHDED IRAADH++DIGPGAG
Sbjct: 564 TGVLYVLDEPSIGLHQRDNDRLLNTLIRLRDLGNTLIVVEHDEDTIRAADHLVDIGPGAG 623

Query: 566 VHGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIEVPKKRVPANPEKVLKLTGARGNNLKD 625
           VHGG +VA+G L  ++   ESLTG Y+SG+R+I  P  R   N  ++L L GA  NNL++
Sbjct: 624 VHGGRIVAQGNLNQLLTAEESLTGAYLSGRRRIATPDSRRAGNGRRLL-LQGANRNNLQN 682

Query: 626 VTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQRQLNGATIAEPAPYRDIQGLEHFDKV 685
           + + +P+G   CITGVSGSGKSTLIN+ L P  +  L G  +  P     ++G +  DKV
Sbjct: 683 LDVEIPLGKLVCITGVSGSGKSTLINELLHPALEHSL-GLKVPFPKGLAVLKGTKAIDKV 741

Query: 686 IDIDQSPIGRTPRSNPATYTGVFTSVRELFAGVPESRARGYTPGRFSFNVRGGRCEACQG 745
           I IDQSPIGRTPRSNPATYTG F  +R++FA   E++ARGY PG+FSFNV+GGRCEAC G
Sbjct: 742 IVIDQSPIGRTPRSNPATYTGAFDPIRQVFAATTEAKARGYQPGQFSFNVKGGRCEACGG 801

Query: 746 DGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKYKGKTIHEVLDMTIEEAREFFDAVPA 805
            GV  +EM+FLPD+YV CD CKG RYNRETL++KYKGKTI +VL+MT+EEA +FF+ +P 
Sbjct: 802 QGVNVIEMNFLPDVYVQCDVCKGARYNRETLQVKYKGKTIADVLNMTVEEAAQFFENIPQ 861

Query: 806 LARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHF 865
            + +LQTL+DVGL Y+RLGQ A TLSGGEAQRVKLA EL++R TG+TLY++DEPTTGL F
Sbjct: 862 ASSRLQTLVDVGLGYVRLGQPAPTLSGGEAQRVKLATELARRATGKTLYLIDEPTTGLSF 921

Query: 866 ADIQQLLDVLHKLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVA 925
            D+ +LLDV+ +L D+GN+IVVIEHNLDVI+ ADWI+DLGPEGG  GGEI+V G PE VA
Sbjct: 922 YDVHKLLDVMQRLVDKGNSIVVIEHNLDVIRCADWIIDLGPEGGDRGGEIVVCGEPEIVA 981

Query: 926 ECEASHTARFLKPML 940
               SHT R+L  +L
Sbjct: 982 THNQSHTGRYLAQVL 996



 Score = 65.5 bits (158), Expect = 2e-14
 Identities = 43/122 (35%), Positives = 60/122 (49%), Gaps = 8/122 (6%)

Query: 606 PANPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQRQLNGA 665
           PA     +++ GAR +NL+++ L LP       TGVSGSGKS+L  DT+F   QR+   +
Sbjct: 21  PAAETDQIRVRGARQHNLQNLDLDLPRNQLIVFTGVSGSGKSSLAFDTIFAEGQRRYVES 80

Query: 666 TIAEPAPY------RDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTSVRELF--AG 717
             A    +       D+  +E     I IDQ      PRS   T T ++  +R LF  AG
Sbjct: 81  LSAYARQFLGQVDKPDVDAIEGLSPAISIDQKSTSHNPRSTVGTVTEIYDYLRLLFGRAG 140

Query: 718 VP 719
            P
Sbjct: 141 AP 142