Pairwise Alignments
Query, 940 a.a., ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC from Escherichia coli BL21
Subject, 1005 a.a., excinuclease ABC subunit UvrA from Rhodopseudomonas palustris CGA009
Score = 1172 bits (3032), Expect = 0.0
Identities = 598/971 (61%), Positives = 735/971 (75%), Gaps = 37/971 (3%)
Query: 4 IEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
I +RGAR HNLKN+++ IPRDKL+V TGLSGSGKSSLAFDT+YAEGQRRYVESLSAYARQ
Sbjct: 20 ITIRGAREHNLKNVDVTIPRDKLVVFTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 79
Query: 64 FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPDH 123
FL +M+KPDVD I+GLSPAISIEQK+TS NPRSTVGT+TEI+DY+RLL+ARVG P P
Sbjct: 80 FLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLWARVGVPYSPAT 139
Query: 124 DVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARIDGEV 183
+P+ +QTVSQMVD VL+ PEG RL LLAP+++ RKGE+ K L + +G+ R +IDG
Sbjct: 140 GLPIESQTVSQMVDRVLALPEGTRLYLLAPVVRGRKGEYRKELADWLKKGFQRVKIDGAF 199
Query: 184 CDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLAESFETALELSGGTAVVADMDDPKA- 242
+L++ P L+ + H I+VVVDR VR D+ QRLAESFETAL+L+ G AV+ D P A
Sbjct: 200 HELAEAPTLDKKFPHDIDVVVDRIVVRPDIGQRLAESFETALKLAEGLAVIEYADAPAAP 259
Query: 243 ------------------------------EELLFSANFACPICGYSMRELEPRLFSFNN 272
E +LFS FACP+ G+++ E+EPRLFSFNN
Sbjct: 260 PTAEPGQDEPADKKKKADKKVAKIHDKSGAERILFSEKFACPVSGFTIPEIEPRLFSFNN 319
Query: 273 PAGACPTCDGLGVQQYFDPDRVIQNPELSLAGGAIRGWDRRNF-YYFQMLKSLADHYKFD 331
P GACP C GLG++Q+ D D V+ + EL+L GAI W + + YY Q L +L HYKF
Sbjct: 320 PYGACPECGGLGIEQHIDADLVVPDKELTLRKGAIAPWAKSSSPYYLQTLTALGKHYKFT 379
Query: 332 VEAPWGSLSANVHKVVLYGSGKENIEFKYMNDRGDTSIRRHPFEGVLHNMERRYKETESS 391
++ W L V V+L+GSG + I+F Y D + + PFEGV+ N+ERR++ETES
Sbjct: 380 LDTKWKDLPKKVQNVLLHGSGDDEIKFSY-EDGVRSYDTKKPFEGVVTNIERRFRETESE 438
Query: 392 AVREELAKFISNRPCASCEGTRLRREARHVYVENTPLPAISDMSIGHAMEFFNNLK--LA 449
REEL K+ S+ PC +C G RL+ EA V V + +S++S+ A ++F + L
Sbjct: 439 WAREELGKYFSDVPCDACHGHRLKPEALCVKVGGKHIGEVSELSVKAAGDWFAKVPEVLN 498
Query: 450 GQRAKIAEKILKEIGDRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGAGLVGVM 509
Q+ +IA +ILKEI DRL FL++VGLNYLTLSRS+ TLSGGE+QRIRLASQIG+GL GV+
Sbjct: 499 KQQNEIAVRILKEIRDRLSFLLDVGLNYLTLSRSSGTLSGGESQRIRLASQIGSGLTGVL 558
Query: 510 YVLDEPSIGLHQRDNERLLGTLIHLRDLGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGG 569
YVLDEPSIGLHQRDN RLL TL LRDLGNTVIVVEHDEDAI ADHV+DIGPGAGVHGG
Sbjct: 559 YVLDEPSIGLHQRDNARLLDTLKRLRDLGNTVIVVEHDEDAILLADHVLDIGPGAGVHGG 618
Query: 570 EVVAEGPLEAIMAVPESLTGQYMSGKRKIEVPKKRVPANPEKVLKLTGARGNNLKDVTLT 629
++A+G IM P+SLTG+Y++G+ + VP++R P N + LKL ARGNNLK+VT
Sbjct: 619 HIIAQGTPAEIMRNPKSLTGKYLTGELSVPVPERR-PPNHRRTLKLVNARGNNLKNVTAE 677
Query: 630 LPVGLFTCITGVSGSGKSTLINDTLFPIAQRQLNGATIAEPAPYRDIQGLEHFDKVIDID 689
+P+GLFTC+TGVSG GKSTL+ DT + R+LN A+ PAPY I+GLEH DK+IDID
Sbjct: 678 IPLGLFTCVTGVSGGGKSTLLIDTFYKAIARKLNNAS-EPPAPYDRIEGLEHIDKIIDID 736
Query: 690 QSPIGRTPRSNPATYTGVFTSVRELFAGVPESRARGYTPGRFSFNVRGGRCEACQGDGVI 749
QSPIGRTPRSNPATYTG FT +RE FAG+PES+ARGY PGRFSFNV+GGRCEACQGDGVI
Sbjct: 737 QSPIGRTPRSNPATYTGAFTPIREWFAGLPESKARGYEPGRFSFNVKGGRCEACQGDGVI 796
Query: 750 KVEMHFLPDIYVPCDQCKGKRYNRETLEIKYKGKTIHEVLDMTIEEAREFFDAVPALARK 809
K+EMHFLPD+YV CD CKGKRYNRETL++ +KGK+I +VLDMTIEEA EFF AVP +
Sbjct: 797 KIEMHFLPDVYVTCDVCKGKRYNRETLDVLFKGKSIADVLDMTIEEAAEFFKAVPRVRET 856
Query: 810 LQTLMDVGLTYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHFADIQ 869
+TL VGL YI +GQ ATTLSGGEAQRVKLA+ELSKR TG+TLYILDEPTTGLHF D+
Sbjct: 857 FKTLQRVGLDYIHVGQQATTLSGGEAQRVKLAKELSKRATGRTLYILDEPTTGLHFHDVA 916
Query: 870 QLLDVLHKLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAECEA 929
+LL+VLH+L QGNT+VVIEHNL+VIKTADW++DLGPEGG GGGEI+ G PE + +
Sbjct: 917 KLLEVLHELVAQGNTVVVIEHNLEVIKTADWVIDLGPEGGDGGGEIVAWGPPEDIVKAPR 976
Query: 930 SHTARFLKPML 940
S+T +FLKP+L
Sbjct: 977 SYTGKFLKPVL 987
Score = 136 bits (343), Expect = 6e-36
Identities = 78/199 (39%), Positives = 111/199 (55%), Gaps = 15/199 (7%)
Query: 406 CASCEGTRLRREARHVYVENTPLPAISDMSIGHAMEFFNNLKLAGQRAKIAEKILKEIGD 465
C C+G R RE V + + + DM+I A EFF K + + +
Sbjct: 810 CDVCKGKRYNRETLDVLFKGKSIADVLDMTIEEAAEFF--------------KAVPRVRE 855
Query: 466 RLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGAGLVG-VMYVLDEPSIGLHQRDN 524
K L VGL+Y+ + + A TLSGGEAQR++LA ++ G +Y+LDEP+ GLH D
Sbjct: 856 TFKTLQRVGLDYIHVGQQATTLSGGEAQRVKLAKELSKRATGRTLYILDEPTTGLHFHDV 915
Query: 525 ERLLGTLIHLRDLGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGPLEAIMAVP 584
+LL L L GNTV+V+EH+ + I+ AD VID+GP G GGE+VA GP E I+ P
Sbjct: 916 AKLLEVLHELVAQGNTVVVIEHNLEVIKTADWVIDLGPEGGDGGGEIVAWGPPEDIVKAP 975
Query: 585 ESLTGQYMSGKRKIEVPKK 603
S TG+++ + + P K
Sbjct: 976 RSYTGKFLKPVLEKKGPAK 994
Score = 67.0 bits (162), Expect = 6e-15
Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 9/133 (6%)
Query: 602 KKRVPANPEKV-LKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQR 660
K++ PA + + + GAR +NLK+V +T+P TG+SGSGKS+L DT++ QR
Sbjct: 8 KRQTPAASSRTAITIRGAREHNLKNVDVTIPRDKLVVFTGLSGSGKSSLAFDTIYAEGQR 67
Query: 661 QLNGATIA------EPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTSVREL 714
+ + A E D+ ++ I I+Q + PRS T T ++ +R L
Sbjct: 68 RYVESLSAYARQFLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLL 127
Query: 715 FA--GVPESRARG 725
+A GVP S A G
Sbjct: 128 WARVGVPYSPATG 140