Pairwise Alignments

Query, 940 a.a., ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC from Escherichia coli BL21

Subject, 944 a.a., excinuclease ABC subunit UvrA from Pseudomonas fluorescens SBW25-INTG

 Score = 1461 bits (3781), Expect = 0.0
 Identities = 715/940 (76%), Positives = 827/940 (87%), Gaps = 1/940 (0%)

Query: 1   MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
           MDKI +RGARTHNLKNI+L +PRDKLIV+TGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
Sbjct: 1   MDKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC 120
           ARQFLS+MEKPDVD IEGLSPAISIEQKSTSHNPRSTVGTITEI+DYLRLL+ARVG PRC
Sbjct: 61  ARQFLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGIPRC 120

Query: 121 PDHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARID 180
           PDHD+PL AQTVSQMVD VL+QPEG +LMLLAP+I+ERKGEH    E L +QG++RARI+
Sbjct: 121 PDHDIPLEAQTVSQMVDLVLAQPEGAKLMLLAPVIRERKGEHLSVFEELRAQGFVRARIN 180

Query: 181 GEVCDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLAESFETALELSGGTAVVADMDDP 240
           G++ +L + PKL+ QKKH+I+VVVDRFKVR DL QRLAESFETAL+L+ G A+VA MDD 
Sbjct: 181 GKLYELDEAPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALKLADGIALVAPMDDE 240

Query: 241 KAEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQNPEL 300
             EE++FSA FACPICG+++ ELEP+LFSFNNPAGACPTCDGLGV+Q+FD  R++ N +L
Sbjct: 241 PGEEIIFSARFACPICGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDIKRLV-NGDL 299

Query: 301 SLAGGAIRGWDRRNFYYFQMLKSLADHYKFDVEAPWGSLSANVHKVVLYGSGKENIEFKY 360
           +LA GAIRGWDRRN YYFQML SLA HYKF +E P+  L A+  KV+L+GSG +N++FKY
Sbjct: 300 TLAEGAIRGWDRRNVYYFQMLGSLASHYKFSLEVPFNQLPADQQKVILHGSGSQNVDFKY 359

Query: 361 MNDRGDTSIRRHPFEGVLHNMERRYKETESSAVREELAKFISNRPCASCEGTRLRREARH 420
           +NDRGD   R HPFEG++ N+ERRY+ETES++VREELAKF+S +PC  C GTRLRREARH
Sbjct: 360 LNDRGDIVKRSHPFEGIVPNLERRYRETESASVREELAKFLSTQPCPDCRGTRLRREARH 419

Query: 421 VYVENTPLPAISDMSIGHAMEFFNNLKLAGQRAKIAEKILKEIGDRLKFLVNVGLNYLTL 480
           V+V    LPA++++ IG A E+F  LKL G+R +IA+KILKEI +RL+FLVNVGL+YL+L
Sbjct: 420 VWVGEKTLPAVTNLPIGDACEYFGVLKLTGRRGEIADKILKEIRERLQFLVNVGLDYLSL 479

Query: 481 SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRDLGNT 540
            RSA+TLSGGEAQRIRLASQIGAGLVGV+Y+LDEPSIGLHQRDN+RLLGTL HLRD+GNT
Sbjct: 480 DRSADTLSGGEAQRIRLASQIGAGLVGVLYILDEPSIGLHQRDNDRLLGTLKHLRDIGNT 539

Query: 541 VIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIEV 600
           VIVVEHDEDAIR AD+V+DIGPGAGVHGG +VAEG    +MA P+SLTG+Y+SG+ KI V
Sbjct: 540 VIVVEHDEDAIRLADYVVDIGPGAGVHGGHIVAEGTPAEVMAHPDSLTGKYLSGRVKIAV 599

Query: 601 PKKRVPANPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQR 660
           P KR P N +  L L GARGNNL++V L +P+GL TC+TGVSGSGKSTLIN+TLFP++  
Sbjct: 600 PAKRTPRNKKLALHLKGARGNNLRNVDLEIPLGLLTCVTGVSGSGKSTLINNTLFPLSAT 659

Query: 661 QLNGATIAEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTSVRELFAGVPE 720
            LNGAT  E A +  I+GLEH DKV+DIDQSPIGRTPRSNPATYTG+FT +RELFAGVPE
Sbjct: 660 ALNGATTLEAAAHDSIKGLEHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAGVPE 719

Query: 721 SRARGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKY 780
           SR+RGY PGRFSFNV+GGRCEACQGDG+IKVEMHFLPDIYVPCD CK KRYNRETLEIKY
Sbjct: 720 SRSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCDVCKSKRYNRETLEIKY 779

Query: 781 KGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKL 840
           KGK+IHE L+MTIEEAR FFDAVPALARKLQTLMDVGL+YI+LGQSATTLSGGEAQRVKL
Sbjct: 780 KGKSIHETLEMTIEEARVFFDAVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKL 839

Query: 841 ARELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHKLRDQGNTIVVIEHNLDVIKTADW 900
           +RELSKR TG+TLYILDEPTTGLHFADIQQLLDVLH+LRD GNT+VVIEHNLDVIKTADW
Sbjct: 840 SRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDHGNTVVVIEHNLDVIKTADW 899

Query: 901 IVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPML 940
           +VDLGPEGGS GG+I+  GTPE V+E   SHT  +LKP+L
Sbjct: 900 LVDLGPEGGSKGGQIIAVGTPEQVSEMPQSHTGYYLKPLL 939