Pairwise Alignments

Query, 421 a.a., ATP-dependent RNA helicase from Escherichia coli BL21

Subject, 439 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  576 bits (1485), Expect = e-169
 Identities = 285/421 (67%), Positives = 341/421 (80%), Gaps = 6/421 (1%)

Query: 1   MSKTHLTEQKFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKT 60
           MS+THL+ QKF+D  LHP+V +AL + GF  CTPIQAL+LP+ L  +D+AGQAQTGTGKT
Sbjct: 1   MSQTHLSNQKFADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKT 60

Query: 61  MAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYG 120
           MAFL +TF++LLS      R++NQPRA+IMAPTRELA+QI  DA  LA+ T LK+G+ YG
Sbjct: 61  MAFLVATFNHLLSSSIPEGRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYG 120

Query: 121 GDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIR 180
           G+ YD Q KVL+ GVDILIGTTGR+IDY +Q  INL AIQ VVLDEADRM+DLGFIKDIR
Sbjct: 121 GESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIR 180

Query: 181 WLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSN 240
           +LFRRMP A+QRLNMLFSATLS +V+ELA++ MN+   +E+ PE+KT   IKEE+FYPS 
Sbjct: 181 FLFRRMPNADQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQ 240

Query: 241 EEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILD 300
           E+KMRLL TLIEE+WP++AI+F+NTKH CE +W  L  DGHRVGLLTGDV QKKR+RIL+
Sbjct: 241 EDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILE 300

Query: 301 EFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLA 360
           +FT+G LDILVATDVAARGLHI  V+HV+NYDLPDDCEDYVHRIGRTGRAG  G S+S A
Sbjct: 301 QFTQGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFA 360

Query: 361 CEEYALNLPAIETYIGHSIPVSKYNPDALMTDLPKPLRLTRPRTGNGPRRTGAPRNRRRS 420
           CEEYALNLPAIETYI HSIPVS Y+ DAL+ D+P P+++ R          GA   R RS
Sbjct: 361 CEEYALNLPAIETYINHSIPVSNYDRDALLDDIPSPVKIHRKHP------AGARNLRERS 414

Query: 421 G 421
           G
Sbjct: 415 G 415