Pairwise Alignments

Query, 421 a.a., ATP-dependent RNA helicase from Escherichia coli BL21

Subject, 559 a.a., DEAD/DEAH box helicase from Ralstonia sp. UNC404CL21Col

 Score =  269 bits (687), Expect = 2e-76
 Identities = 168/419 (40%), Positives = 226/419 (53%), Gaps = 18/419 (4%)

Query: 11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70
           FS+  L  K+V A+ + G+   TPIQ  A+P  L G D+   AQTGTGKT  F     H 
Sbjct: 3   FSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLLHR 62

Query: 71  LLSHPAIADRKVNQP-------RALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDG 123
           L    A    KV  P       RAL++ PTRELA Q+        +   LK  + +GG G
Sbjct: 63  L---SASQPNKVQTPQGMRFPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVG 119

Query: 124 YDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLF 183
            + Q+  L+ GVDI++ T GRL+D+  Q  I+L  I+++VLDEADRM D+GFI DIR + 
Sbjct: 120 INPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKIL 179

Query: 184 RRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEK 243
             +PP  Q  N+LFSAT S  +RELA   ++    IEV     T   +++ ++    E K
Sbjct: 180 NILPPKRQ--NLLFSATFSDDIRELADRLLDKPALIEVARRNTTAETVEQRIYPVDRERK 237

Query: 244 MRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFT 303
             LL  L+ +    + ++F  TKH    +   L  DG     + G+ +Q  R R L EF 
Sbjct: 238 RELLAKLVRDNDWHQVLVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALTEFK 297

Query: 304 RGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE 363
            G L +LVATD+AARG+ I  + HV N+DLP+  EDYVHRIGRTGRAGA G +ISL C +
Sbjct: 298 AGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVD 357

Query: 364 YALNLPAIETYIGHSIP---VSKYNPDALMTDLPKPL-RLTRPRTGNGPRRTGAPRNRR 418
               L  IE  I   +P   +  + PD  +   P P  R +  R GN   R G P   R
Sbjct: 358 EHGLLRDIERLIKRELPRTVLEGFEPDPTIAAEPIPNGRNSAGRGGNA--RGGRPGGGR 414