Pairwise Alignments

Query, 421 a.a., ATP-dependent RNA helicase from Escherichia coli BL21

Subject, 515 a.a., RNA helicase from Burkholderia phytofirmans PsJN

 Score =  268 bits (684), Expect = 4e-76
 Identities = 167/429 (38%), Positives = 236/429 (55%), Gaps = 23/429 (5%)

Query: 11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70
           F    L   +V A+ + G+   TPIQ  A+P  L G D+   AQTGTGKT  F       
Sbjct: 3   FDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQR 62

Query: 71  LLSHPAIADRKVNQP-RALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLK 129
           L + PA+      +  RALI+ PTRELA Q+        +   LK  + +GG G + Q+ 
Sbjct: 63  LNTMPAVTTGSGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIG 122

Query: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189
            L SGVDI++ T GRL+D+ +Q  I+L  ++++VLDEADRM D+GFI DI+ +  ++PP 
Sbjct: 123 ALRSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPK 182

Query: 190 NQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQT 249
            Q  N+LFSAT S  ++ LA   +++   IEV     T   + +++     ++K  LL  
Sbjct: 183 RQ--NLLFSATFSDEIKTLADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTH 240

Query: 250 LIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDI 309
           LI++    + ++F  TKH    +   L  D      + G+ +Q  R R L EF  G L +
Sbjct: 241 LIKQHNWFQVLVFTRTKHGANRLAEQLTKDSISALAIHGNKSQSARTRALAEFKDGTLQV 300

Query: 310 LVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLP 369
           LVATD+AARG+ I  + HV NYDLP+  EDYVHRIGRTGRAGA+G +ISL C +    L 
Sbjct: 301 LVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAISLVCVDELQLLK 360

Query: 370 AIETYIGHSIP---VSKYNPDALMTDLPKPLRLTR-----------PRTGNG-PRRTGA- 413
            IE  I   +P   ++ + PD   T  P+P+ L R           PR G G P+R GA 
Sbjct: 361 DIEKLIKRPVPQEVIAGFEPDP--TAKPEPI-LRRGQGGGGGGGRSPRQGQGAPKRDGAG 417

Query: 414 -PRNRRRSG 421
             +  +RSG
Sbjct: 418 SAKPAQRSG 426