Pairwise Alignments

Query, 421 a.a., ATP-dependent RNA helicase from Escherichia coli BL21

Subject, 489 a.a., DEAD/DEAH box helicase from Burkholderia phytofirmans PsJN

 Score =  276 bits (707), Expect = 8e-79
 Identities = 165/424 (38%), Positives = 240/424 (56%), Gaps = 8/424 (1%)

Query: 1   MSKTHLTEQK--FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTG 58
           MS T +T     F  F L P +++A+++ G+   TPIQ  A+P+ LAGRD+ G AQTGTG
Sbjct: 1   MSDTAVTPSTATFDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTG 60

Query: 59  KTMAFLTSTFHYLLSHPAIADRKVNQP-RALIMAPTRELAVQIHADAEPLAEATGLKLGL 117
           KT +F       LL   + +      P RALI+ PTRELA Q+ A+ +  A+ T L+  +
Sbjct: 61  KTASFSLPIIQRLLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAV 120

Query: 118 AYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIK 177
            +GG   + Q + L  GV+ILI T GRL+D+ +Q   NLG +Q++VLDEADRM D+GF+ 
Sbjct: 121 VFGGVDMNPQSEQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLP 180

Query: 178 DIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFY 237
           D++ +   +P   +R  +LFSAT S  +++LA   + N + IEV     T   + + ++ 
Sbjct: 181 DLQRILNLLP--KERQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQVVYE 238

Query: 238 PSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLR 297
            +  +K   +  LI E    + I+F N+K     +   L  DG     + GD  Q +R++
Sbjct: 239 VAEGDKTGAVVQLIRERGLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRTQNERMQ 298

Query: 298 ILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357
            LD F RG+++ LVATDVAARGL I  +  V N+DLP + EDYVHRIGRTGRAGASG ++
Sbjct: 299 ALDAFKRGEIEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDAL 358

Query: 358 SLACEEYALNLPAIETYIGHSIPVSKYNPDALMTDLPKPLRLTRPRTGNGPRRTGAPRNR 417
           SL        L  IE  I   + V +   +A +    +     R R+  G    G   +R
Sbjct: 359 SLCSPNERKQLADIEKLIKRPLDVQRLTVEAPVRHHHEERAPRRERSSEGREDRG---SR 415

Query: 418 RRSG 421
           RR+G
Sbjct: 416 RRTG 419