Pairwise Alignments
Query, 501 a.a., D-ribose ABC transporter ATPase from Escherichia coli BL21
Subject, 503 a.a., ribose import ATP-binding protein RbsA from Phaeobacter inhibens DSM 17395
Score = 434 bits (1115), Expect = e-126
Identities = 228/491 (46%), Positives = 322/491 (65%), Gaps = 2/491 (0%)
Query: 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYARDAGTLLW 63
+L+L+GI K FPGV+AL G +L + PG V AL+GENGAGKST+MKVL GI+ D G ++
Sbjct: 7 VLRLEGIVKTFPGVRALDGVSLTILPGEVHALMGENGAGKSTLMKVLGGIHQPDEGQIIV 66
Query: 64 LGKETTFTGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGKIDWKTMYAEAD 123
+ +GP ++ GI IHQEL+L +L++AENI+LG RFG +DW + A+ +
Sbjct: 67 AEQPVVMSGPLDAKAKGIVFIHQELSLADELSVAENIYLGELPRKRFGLVDWAELEAKTN 126
Query: 124 KLLAKLNLRFKSDKLVGDLSIGDQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRV 183
+L KL + F + VGDLSI +QQMVEIA+ L+ ++K +I DEPT +LTD E LF V
Sbjct: 127 AILEKLKVGFNAKTRVGDLSIANQQMVEIARALTVDAKAVIFDEPTASLTDAEKVVLFEV 186
Query: 184 IRELKSQGRGIVYISHRMKEIFEICDDVTVFRDGQFIAEREVASLTEDSLIEMMVGRKLE 243
I +L+ QG GI YISHRM+EIF+I D ++V RDGQ+ A E+++ +MM+GRKL+
Sbjct: 187 ISDLQEQGVGIAYISHRMEEIFKITDRISVLRDGQYQGTVNTAETNEENVTQMMIGRKLD 246
Query: 244 DQYPHLDKAPGDIRLKVDNL-CGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGAL 302
G++ L+V L CG DV+F +R+GE++G GL+GAGRTE+ + L+G
Sbjct: 247 LSRNEAHHELGEVALEVRGLSCGSLFEDVNFEVRRGEVVGFYGLVGAGRTEIAETLFGLR 306
Query: 303 PRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRA 362
TSG + LDG EV SP D + GI + EDRK GLVLGM+ ++NM+L + +A
Sbjct: 307 NPTSGSIFLDGAEVAITSPHDAIERGISLVPEDRKGQGLVLGMNCRDNMTLPQVDDL-KA 365
Query: 363 GGSLKHADEQQAVSDFIRLFNVKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEP 422
G + E + +++TP +Q +G LSGGNQQK+ I + L RP VLI+DEP
Sbjct: 366 GPFVADGAEIAIFDQYRDKLDIRTPGWKQLVGNLSGGNQQKIVIGKWLSMRPNVLIVDEP 425
Query: 423 TRGVDVGAKKEIYQLINQFKADGLSIILVSSEMPEVLGMSDRIIVMHEGHLSGEFTREQA 482
TRG+DVG+K EI+ L+ A G ++I++SSEMPEVL ++DRI+ M+ G + FT E+
Sbjct: 426 TRGIDVGSKAEIHNLLRDLAAQGYAVIVISSEMPEVLHVADRIVAMYSGRIMRTFTSEEV 485
Query: 483 TQEVLMAAAVG 493
T+E L+AA G
Sbjct: 486 TEENLIAAISG 496
Score = 98.6 bits (244), Expect = 5e-25
Identities = 73/234 (31%), Positives = 110/234 (47%), Gaps = 13/234 (5%)
Query: 266 PGV---NDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQ 322
PGV + VS T+ GE+ + G GAG++ LMKVL G G + + VV P
Sbjct: 18 PGVRALDGVSLTILPGEVHALMGENGAGKSTLMKVLGGIHQPDEGQIIVAEQPVVMSGPL 77
Query: 323 DGLANGIVYISEDRKRDGLVLGMSVKENMSLTAL--RYFSRAGGSLKHADEQQAVSDFIR 380
D A GIV+I ++ L +SV EN+ L L + F + A +
Sbjct: 78 DAKAKGIVFIHQELS---LADELSVAENIYLGELPRKRFGLVDWAELEAKTNAILEKLKV 134
Query: 381 LFNVKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQ 440
FN KT +G LS NQQ V IAR L K +I DEPT + K ++++I+
Sbjct: 135 GFNAKT-----RVGDLSIANQQMVEIARALTVDAKAVIFDEPTASLTDAEKVVLFEVISD 189
Query: 441 FKADGLSIILVSSEMPEVLGMSDRIIVMHEGHLSGEFTREQATQEVLMAAAVGK 494
+ G+ I +S M E+ ++DRI V+ +G G + +E + +G+
Sbjct: 190 LQEQGVGIAYISHRMEEIFKITDRISVLRDGQYQGTVNTAETNEENVTQMMIGR 243
Score = 84.0 bits (206), Expect = 1e-20
Identities = 60/219 (27%), Positives = 106/219 (48%), Gaps = 5/219 (2%)
Query: 30 GRVMALVGENGAGKSTMMKVLTGIYARDAGTLLWLGKETTFTGPKSSQEAGIGIIHQELN 89
G V+ G GAG++ + + L G+ +G++ G E T P + E GI ++ ++
Sbjct: 282 GEVVGFYGLVGAGRTEIAETLFGLRNPTSGSIFLDGAEVAITSPHDAIERGISLVPEDRK 341
Query: 90 ---LIPQLTIAENIFLGREFVNRFGK-IDWKTMYAEADKLLAKLNLRFKSDK-LVGDLSI 144
L+ + +N+ L + + G + A D+ KL++R K LVG+LS
Sbjct: 342 GQGLVLGMNCRDNMTLPQVDDLKAGPFVADGAEIAIFDQYRDKLDIRTPGWKQLVGNLSG 401
Query: 145 GDQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRMKEI 204
G+QQ + I K LS V+I+DEPT + + ++R+L +QG ++ IS M E+
Sbjct: 402 GNQQKIVIGKWLSMRPNVLIVDEPTRGIDVGSKAEIHNLLRDLAAQGYAVIVISSEMPEV 461
Query: 205 FEICDDVTVFRDGQFIAEREVASLTEDSLIEMMVGRKLE 243
+ D + G+ + +TE++LI + G E
Sbjct: 462 LHVADRIVAMYSGRIMRTFTSEEVTEENLIAAISGLDTE 500