Pairwise Alignments

Query, 330 a.a., D-xylose transporter subunit from Escherichia coli BL21

Subject, 340 a.a., xylitol ABC transporter, periplasmic substrate-binding protein (from data) from Dinoroseobacter shibae DFL-12

 Score =  236 bits (602), Expect = 6e-67
 Identities = 125/315 (39%), Positives = 191/315 (60%), Gaps = 7/315 (2%)

Query: 10  LCTSLLLTNVAAHA-KEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEE 68
           L  +++   V   A  +V +G++  + + ERW+ D        E+ GA      A  +  
Sbjct: 6   LAAAIVAAGVTTSAYADVTVGVSWSNFQEERWKTDEAAIKAALEAAGATYVSADAQSSSA 65

Query: 69  TQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMINDADIDFYISFD 128
            Q+S +E++I +GVD L+I+  + Q +   V+ A  EGI V+ YDR+I D    FY++FD
Sbjct: 66  KQLSDVESLIAQGVDALIILAQDSQAIGPAVQAAADEGIPVVGYDRLIEDPRA-FYLTFD 124

Query: 129 NEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGKIKVVGDQW 188
           N +VG +QA+A+++  P+GNY ++ GSP D NA   R GQ ++L+  +D+GKI +VG+ +
Sbjct: 125 NVEVGRMQARAVLEQAPEGNYVMIKGSPTDPNADFLRGGQQEILQDAIDAGKITIVGEAY 184

Query: 189 VDGWLPENALKIMENALTANNNKIDAVVASNDATAGGAIQALSAQGLSGKVAISGQDADL 248
            DGWLP NA + ME  LTA +N++DAVVASND TAGG + AL+AQG+ G + +SGQD D 
Sbjct: 185 TDGWLPANAQRNMEQILTAQDNQVDAVVASNDGTAGGVVAALTAQGMEG-IPVSGQDGDH 243

Query: 249 AGIKRIAAGTQTMTVYKPITLLANTAAEIAVELGNGQE----PKADTSLNNGLKDVPSRL 304
           A + R+A GTQT++V+K    L   A EIAV + NG        A +  + G  ++ +R 
Sbjct: 244 AALNRVAKGTQTVSVWKDARDLGRAAGEIAVAMANGTAMADIEGATSWTSPGGTELTARF 303

Query: 305 LTPIDVNKNNIKDTV 319
           L P+ V  +N+   V
Sbjct: 304 LAPVPVTADNLTAVV 318