Pairwise Alignments

Query, 240 a.a., putative PAS domain-containing DNA-binding transcriptional regulator from Escherichia coli BL21

Subject, 208 a.a., hypothetical protein from Pseudomonas fluorescens FW300-N2E3

 Score = 72.8 bits (177), Expect = 5e-18
 Identities = 55/205 (26%), Positives = 95/205 (46%), Gaps = 9/205 (4%)

Query: 29  LKSYEAVVDGLAMLIGSHCEIVLHSLQDLKCSAIRIANGEHTGRKIGSPITDLALRMLHD 88
           L +Y A+ D +A L   H E+VLH   DL+   I       + R++G    D AL  +  
Sbjct: 10  LDNYRAIADAIATLFFPHAEVVLH---DLRTQKIDYIANNLSKREVGD---DAALEDMLS 63

Query: 89  MTGADSSVSKCYFTRAKSGVLMKSLTIAIRNREQRVIGLLCINMNLDV--PFSQIMSTFV 146
              ++ ++   Y      G  ++SL+  +R+ E R I +LCIN+N+ +       +  F+
Sbjct: 64  EEVSERNIGP-YEKLNWDGQKIRSLSSVLRDSEGRPIAVLCINLNISLFENAKAALDLFL 122

Query: 147 PPETPDVGSSVNFASSVEDLVTQTLEFTIEEVNADRNVSNNAKNRQIVLNLYEKGIFDIK 206
            P          F    ++ +   L   + E     N+      R++VL L+ +G F  K
Sbjct: 123 SPSKLIPQPDALFRDDWQERINTFLHNWLRERQLGLNMLTREHKRELVLALHAEGAFKGK 182

Query: 207 DAINQVADRLNISKHTVYLYIRQFK 231
            A N VA+ LN+ + TVY ++++ K
Sbjct: 183 SASNYVANVLNMGRATVYKHLKELK 207