Pairwise Alignments

Query, 240 a.a., putative PAS domain-containing DNA-binding transcriptional regulator from Escherichia coli BL21

Subject, 226 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  166 bits (419), Expect = 5e-46
 Identities = 89/221 (40%), Positives = 138/221 (62%), Gaps = 11/221 (4%)

Query: 23  QTDFDILKSYEAVVDGLAMLIGSHCEIVLHSLQDLKCSAIRIANGEHTGRKIGSPITDLA 82
           Q+D DILKS E +VDG+A + G H E+VLHSL     S I+IANG  TGR++G+PIT+LA
Sbjct: 8   QSDLDILKSIENIVDGIAAMYGEHTEVVLHSLDAKHPSVIKIANGHVTGREVGAPITNLA 67

Query: 83  LRMLHDMTGADSSVSKCYFTRAKSGVLMKSLTIAIRNREQRVIGLLCINMNLDVPFSQIM 142
           L  L   TG D  +S  Y T+  +G  ++S+T  IRN +   IGLLCIN ++D P   ++
Sbjct: 68  LLKL--KTGQD--ISNSYLTKCANGKTLRSITTVIRNPKNLPIGLLCINTDMDAPLQSVL 123

Query: 143 STFVPPETPDVGSSVN-----FASSVEDLVTQTLEFTIEEVNADRNVSNNAKNRQIVLNL 197
            T +P +   +GS +      FA ++++ +  T++    E+ A+  +S + K+R+IV  L
Sbjct: 124 RTMMPEQL--LGSELTSSPEVFARNIDEALHSTIDSVNHEIRANPAISASQKSREIVNQL 181

Query: 198 YEKGIFDIKDAINQVADRLNISKHTVYLYIRQFKSGDFQGQ 238
           +E GIF++KD+    A RL IS H++Y Y+R+ K+   + +
Sbjct: 182 HELGIFELKDSAQVAATRLGISVHSIYRYLREIKANQAESE 222