Pairwise Alignments

Query, 646 a.a., targeting factor for csrBC sRNA degradation from Escherichia coli BL21

Subject, 661 a.a., cyclic di-GMP phosphodiesterase from Pantoea sp. MT58

 Score = 96.3 bits (238), Expect = 4e-24
 Identities = 89/431 (20%), Positives = 193/431 (44%), Gaps = 15/431 (3%)

Query: 212 QHSRLDTLIRSYAAQDVKTGLNNRLFFDNQLATLLE--DQEKVGTHGIVMMIRLPDFNML 269
           +  R    +R  A  D  TGL NR     Q++  LE    ++ G    V+ + L +F  +
Sbjct: 225 EERRAQERLRVLANTDTVTGLPNRNAIHQQISLALERAGHDETG----VVYLDLDNFKKV 280

Query: 270 SDTWGHSQVEEQFFTLTNLLSTFMMRYPGALLARYHRSDFAALLPHRTLKEAESIAGQLI 329
           +D +GH   ++    ++  + + + +     L R    +F  L  H +    E+++ +++
Sbjct: 281 NDAYGHMFGDQLLQAVSLAILSCLGK--DQTLGRLGGDEFVVLAEHTSQAALEAMSSRIL 338

Query: 330 KAVDTLPNNKMLDRDDMIHIGIC-AWRSGQDTEQVMEHAESATRNAGLQGGNSWAIYDDS 388
           + +       +++      IGI  A   G+D E ++ +A++A  +A   G   + ++   
Sbjct: 339 ERLRQPFRIGLIEVYSGCSIGIAFAPLHGEDRESLIRNADTAMYHAKENGRGKFCVFAAE 398

Query: 389 LPEKGRGNVRWRTLIEQMLSRGGPRLYQKPAVTREGQVHHRELMCRIFDGNEE--VSSAE 446
           + ++    +   T + + L      ++ +P +  +GQV   E + R ++  E   VS A+
Sbjct: 399 MNQRVFEYLWLDTNLRKALELDHLLVHYQPKIDSDGQVRSAEALVR-WNSPERGMVSPAD 457

Query: 447 YMPMVLQFGLSEEYDRLQISRLIPLLRYWPEENLAIQVTVESLIRPRFQRWLRDTLMQCE 506
           ++P   + GL     R  +  ++  +  W ++ + +++ V    R    + +   L Q  
Sbjct: 458 FIPYAEESGLIVPLGRWVMLNVLQQIIVWRQQGIFLRIAVNVSARQLLDQSIYTDLKQAL 517

Query: 507 KSQRKR---IIIELAEADVGQHISRLQPVIRLVNALGVRVAVNQAGLTLVSTSWIKELNV 563
                    I IEL E+ + ++ +    +++    LG +V ++  G    S S +  + +
Sbjct: 518 HEANITDCPIDIELTESCLIENETEALKLMKQFQELGAQVHLDDFGTGYSSLSQLARVPI 577

Query: 564 ELLKLHPGLVRNIEKRTENQLLVQSLVEACSGTSTQVYATGVRSRSEWQTLIQRGVTGGQ 623
             +KL    +R+I K+  +Q LV+++V        QV A G+ +  E + +++ GV G Q
Sbjct: 578 NAIKLDQSFIRDINKQPVSQSLVRAIVAVAKALDLQVIAEGIETPDEEKFVLKSGVDGRQ 637

Query: 624 GDFFASSQPLD 634
           G ++A   P +
Sbjct: 638 GYYYAKPMPAE 648