Pairwise Alignments

Query, 646 a.a., targeting factor for csrBC sRNA degradation from Escherichia coli BL21

Subject, 649 a.a., RNase E specificity factor CsrD from Pantoea sp. MT58

 Score =  674 bits (1739), Expect = 0.0
 Identities = 350/649 (53%), Positives = 452/649 (69%), Gaps = 3/649 (0%)

Query: 1   MRLTTKFSAFVTLLTGLTIFVTLLGCSLSFYNAIQYKFSHRVQAVATAIDTHLVSNDFSV 60
           MRLTTK SAF+T L+ L + + L GC+LS +     +  HR Q +AT +D  + +   + 
Sbjct: 1   MRLTTKLSAFITFLSLLAMSLMLAGCALSVFWFSHQRVEHRAQVLATEVDQAMFTESPAA 60

Query: 61  LRPQITELMMSADIVRVDLLHGDKQVYTLARNGSYRPVGSSDLFRELSVPLIKHPGMSLR 120
           L   +T +M   +  ++ L  G +   TL+R+ +       + F ++ VPL+   G+ LR
Sbjct: 61  LHGWLTRMMPIMNAEQISLHDGKQTFLTLSRHENQMLEDEPNRFFQVDVPLMHQTGLQLR 120

Query: 121 LVYQDPMGNYFHSLMTTAPLTGAIGFIIVMLFLAV---RWLQRQLAGQELLETRATRILN 177
           +V  DP   +  S+  T  L      ++VM  L +   RWL RQ  G E  E RA  I+N
Sbjct: 121 VVTLDPAKTWLRSITGTYTLGILFTVVLVMSLLLLMMHRWLSRQWRGMENFEARAEAIIN 180

Query: 178 GERGSNVLGTIYEWPPRTSSALDTLLREIQNAREQHSRLDTLIRSYAAQDVKTGLNNRLF 237
           GERG        EWPPR S A+D LL ++Q A EQ  R+DTLIR++AAQD +TGLNNRLF
Sbjct: 181 GERGIMPDRGADEWPPRASRAMDLLLADLQEAGEQRLRIDTLIRTFAAQDGRTGLNNRLF 240

Query: 238 FDNQLATLLEDQEKVGTHGIVMMIRLPDFNMLSDTWGHSQVEEQFFTLTNLLSTFMMRYP 297
           FDNQLATLLEDQE VGTHG+VMM+RLPD + L D      VEE  F   N+LSTF++RYP
Sbjct: 241 FDNQLATLLEDQENVGTHGVVMMVRLPDLDTLKDRLEQGLVEEYLFNFVNMLSTFVLRYP 300

Query: 298 GALLARYHRSDFAALLPHRTLKEAESIAGQLIKAVDTLPNNKMLDRDDMIHIGICAWRSG 357
           GALLARY RSDFA LLPHR+LKEA SIA QLI AVD+LP  +M++RDD+IHIGI AW SG
Sbjct: 301 GALLARYFRSDFAVLLPHRSLKEANSIADQLINAVDSLPPMRMVNRDDLIHIGISAWHSG 360

Query: 358 QDTEQVMEHAESATRNAGLQGGNSWAIYDDSLPEKGRGNVRWRTLIEQMLSRGGPRLYQK 417
           Q   QV+E+AE ATR A L GGN+W     +  + GRG+VRWRTL+E  LSRGGPRLY K
Sbjct: 361 QTVPQVIENAEMATRRAALLGGNNWTNGAGNPQDAGRGSVRWRTLLENTLSRGGPRLYHK 420

Query: 418 PAVTREGQVHHRELMCRIFDGNEEVSSAEYMPMVLQFGLSEEYDRLQISRLIPLLRYWPE 477
           P V  EG+V HR ++ RIFDG++EV +AEYMP+V Q G+++ +DR  ++R+  L   WPE
Sbjct: 421 PTVNIEGKVQHRVMLTRIFDGDKEVLAAEYMPLVQQLGMADAWDRQLMTRIAALSELWPE 480

Query: 478 ENLAIQVTVESLIRPRFQRWLRDTLMQCEKSQRKRIIIELAEADVGQHISRLQPVIRLVN 537
           E L I VT+ SL++  F  WL++ L+QC K+QRKR + ELAEADV QHI+RL PV R + 
Sbjct: 481 ETLVIPVTITSLLQRPFVVWLQNMLLQCPKAQRKRFLFELAEADVCQHINRLAPVFRALK 540

Query: 538 ALGVRVAVNQAGLTLVSTSWIKELNVELLKLHPGLVRNIEKRTENQLLVQSLVEACSGTS 597
           A G RVAVNQAGLT+VS+++I++L +EL+KL  GLVRNIE+RTENQL VQSL+E C  T 
Sbjct: 541 AFGCRVAVNQAGLTVVSSAYIRQLPLELIKLDAGLVRNIERRTENQLFVQSLLEVCKCTG 600

Query: 598 TQVYATGVRSRSEWQTLIQRGVTGGQGDFFASSQPLDTNVKKYSQRYSV 646
            QV+ATGVR+++EWQTL+  GV GGQGDFFASS P+++NVKKYSQRY +
Sbjct: 601 IQVFATGVRTKAEWQTLVALGVAGGQGDFFASSLPVNSNVKKYSQRYRI 649