Pairwise Alignments

Query, 244 a.a., membrane spanning protein in TonB-ExbB-ExbD complex from Escherichia coli BL21

Subject, 231 a.a., MotA/TolQ/ExbB proton channel family protein from Pseudomonas fluorescens FW300-N1B4

 Score =  124 bits (311), Expect = 2e-33
 Identities = 74/193 (38%), Positives = 109/193 (56%), Gaps = 5/193 (2%)

Query: 11  SVWGMYQHADIVVKCVMIGLILASVVTWAIFFSKSVEFFNQKRRLKREQQLLAEARSLNQ 70
           S+W +  +A IVV+ VM+ L+ ASV +W + F +S      +R L+  ++       L++
Sbjct: 10  SMWSLVSNASIVVQLVMLILVAASVTSWIMIFQRSNLLRAGRRALESFEERFWSGIDLSK 69

Query: 71  ANDIAADFGSKSLSLHLLNEAQ----NELELSEGSDDNEGIKERTSFRLERRVAAVGRQM 126
               A         +  +  A     + L    G D  E + E  +  +   ++    ++
Sbjct: 70  LYRQAGSNPDPDSGVEQIFRAGFKEFSRLRQQSGVDP-EAVMEGVARAMRVAISREEEKL 128

Query: 127 GRGNGYLATIGAISPFVGLFGTVWGIMNSFIGIAQTQTTNLAVVAPGIAEALLATAIGLV 186
            +   +LAT+G++SP++GLFGTVWGIMNSF G+A  Q   LA VAPGIAEAL+ATAIGL 
Sbjct: 129 EQSLPFLATVGSVSPYIGLFGTVWGIMNSFRGLATAQQATLATVAPGIAEALIATAIGLF 188

Query: 187 AAIPAVVIYNVFA 199
           AAIPAV+ YN FA
Sbjct: 189 AAIPAVIAYNRFA 201