Pairwise Alignments

Query, 244 a.a., membrane spanning protein in TonB-ExbB-ExbD complex from Escherichia coli BL21

Subject, 228 a.a., MotA/TolQ/ExbB proton channel (RefSeq) from Shewanella sp. ANA-3

 Score =  122 bits (307), Expect = 5e-33
 Identities = 75/201 (37%), Positives = 115/201 (57%), Gaps = 6/201 (2%)

Query: 6   MQTDLSVWGMYQHADIVVKCVMIGLILASVVTWAIFFSKSVEFFNQKRRLKREQQLLAEA 65
           MQ D+S+ G++  A ++VK VM  L+  SV++W +   +     + K +  + +      
Sbjct: 1   MQADMSIVGLFLQASLLVKFVMFTLLCLSVMSWTVILQRRSLLTSAKSKSAKFEDKFWSG 60

Query: 66  RSLNQA-NDIAA---DFGSKSLSLHLLNEAQNELELSEGSDDNEGIKERTSFRLERRVAA 121
             LN+   +++A   + G +SL +    E     +L+    D   + + TS  +   ++ 
Sbjct: 61  VDLNRLYKELSARPDNTGLESLFVTGFKEYSRLNKLNSKVPD--AVMDGTSRAMRVTLSR 118

Query: 122 VGRQMGRGNGYLATIGAISPFVGLFGTVWGIMNSFIGIAQTQTTNLAVVAPGIAEALLAT 181
              ++      LATIG+ SP++GLFGTVWGIMNSFI I   +   LA+VAPGIAEAL+AT
Sbjct: 119 ELEKLEANLPLLATIGSTSPYIGLFGTVWGIMNSFIAIGSMENATLAMVAPGIAEALIAT 178

Query: 182 AIGLVAAIPAVVIYNVFARQI 202
           A+GL AAIPAV+ YN FA Q+
Sbjct: 179 AMGLFAAIPAVIAYNRFATQV 199