Pairwise Alignments

Query, 608 a.a., hydrogenase 3, membrane subunit from Escherichia coli BL21

Subject, 531 a.a., NADH dehydrogenase (quinone) (NCBI) from Rhodospirillum rubrum S1H

 Score =  158 bits (399), Expect = 6e-43
 Identities = 120/415 (28%), Positives = 202/415 (48%), Gaps = 41/415 (9%)

Query: 34  IAGIGGAVGSLYTAAAGFTVLTGAVGVSGALSLVSYDVQISPLNAIWLITLGLCGLFVSL 93
           +AG     G+L   A   T +   +  SG L  +        L+A+  I +   GL  +L
Sbjct: 31  LAGAPSVAGALGAFAVAVT-MAFRIAESGDLFALGGWFHADALSAVVAIVVTFVGLAATL 89

Query: 94  YNIDWHRH----AQVKCNGLQI----NMLMAAAVCAV-IASNLGMFVVMAEIMALCAVFL 144
           ++I + RH     Q     L +    N +  A + AV + +N+ M  V+ E   L +  L
Sbjct: 90  FSIGYLRHEVEAGQYSQTRLPVYFVLNSVFIATMAAVTVTNNVIMMYVVVEATTLASALL 149

Query: 145 TSNSKEGKLWFA-------------LGRLGTLLLAIACWLLWQRYGTLDLRLLDMRMQQL 191
            +  ++   W A             +G LG ++L  A   L   +  + +  L     QL
Sbjct: 150 VTYYRKPGAWEAGYKYLLLCSVGITMGLLGCVILYSAAVPLLGGHRAMQISELATVADQL 209

Query: 192 PLGSDI--WLLGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTVVMKIGLLGILTLS 249
           P  + +   +L +IGFG  AG+IP H W+P AH+ + +P +AL S V +K+ +  I  ++
Sbjct: 210 PPTAVVVGCVLIIIGFGSKAGLIPFHAWLPDAHSQSPSPVSALLSGVTLKVAIYAIARIA 269

Query: 250 LL--GGNAPLWWGIALLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIILLGLGAGV 307
            L   G+  L  G+  +VLG IT   G + A  + +++RLLAY ++  +G I++GLG G 
Sbjct: 270 SLFYAGHGAL--GVFCIVLGAITMLGGIIAAFSQTDLKRLLAYSSVSQVGYIIMGLGIG- 326

Query: 308 TGIALEQPALIALGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPV 367
                       LG  G +YHL+NH+L K++LFL  G + +  G   IE+LG   K  P+
Sbjct: 327 ----------SYLGFYGAVYHLMNHALDKAMLFLCTGLLLYSCGTTSIEELGK-RKHSPL 375

Query: 368 ISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFKLSNSGAFVARLLGPLLAVGLAI 422
           +++   +G +A++ +PPLNGF  ++ IY +  +     A    LL  L+ + + +
Sbjct: 376 VALCFFIGALAISGVPPLNGFWSKFAIYTAAAEAHLWWALGVALLTSLITIAVLV 430