Pairwise Alignments

Query, 191 a.a., RNA polymerase sigma E factor from Escherichia coli BL21

Subject, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

 Score =  286 bits (731), Expect = 2e-82
 Identities = 140/190 (73%), Positives = 171/190 (90%), Gaps = 1/190 (0%)

Query: 1   MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYR 59
           M+EQLTDQVL+ERVQ GD++AFNLLV+RYQ+KV +L+SRYV  SGDV DV QEAFIKAYR
Sbjct: 1   MNEQLTDQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYR 60

Query: 60  ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119
           A+ +FRG+SAFYTWLYRIAVNTAKN++VAQ RRPP+SDVDA EAE +E G ALKE+SNPE
Sbjct: 61  AIPTFRGESAFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAEEAEFYEGGDALKELSNPE 120

Query: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179
           N+ LS+EL++ VF  I++LP+DL+ A+TLRELDGLSYEEIA +MDCPVGTVRSRIFRARE
Sbjct: 121 NITLSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRARE 180

Query: 180 AIDNKVQPLI 189
           A++ K++PL+
Sbjct: 181 AVEKKIKPLL 190