Pairwise Alignments

Query, 311 a.a., dsd operon activator; autorepressor from Escherichia coli BL21

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella amazonensis SB2B

 Score =  146 bits (369), Expect = 5e-40
 Identities = 94/288 (32%), Positives = 143/288 (49%), Gaps = 8/288 (2%)

Query: 17  LSKMHTFEVAARHQSFALAAEELSLSPSAVSHRINQLEEELGIQLFVRSHRKVELTHEGK 76
           L+ +  FE AARH SF  AAEEL ++ +AVSH+I  LE+ LG++LF R +R + LT EG+
Sbjct: 8   LNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSLLLTEEGQ 67

Query: 77  RVYWALKSSLDTLNQEILDIKNQELSGTLTLYSRPSIAQCWLVPALGDFTRRYPSISLTV 136
             +  +K     L+     +  +   G+LT+   PS A  WLVP L  F+ + P I + +
Sbjct: 68  SYFLDIKDIFTQLSDATDRLLARSAIGSLTVSMSPSFAIQWLVPRLAKFSEKNPDIDVRI 127

Query: 137 LTGNDNVNLQRAGIDLAIYFDDAPSAQLTHHFLMDEEILPVCSPEYAQRHALTNTVINLC 196
              +         +D+AIY+       L    L +E ++PVCSP     H    T  +L 
Sbjct: 128 KAVDSEEGSLTDDVDVAIYYGQGSWPGLRADKLRNEVLIPVCSPMLLNGHKPLETPADLK 187

Query: 197 HCTLLHDRQAWSNDSGTDEWHSWAQHYAV-NLPTSSGIGFDRSDLAVIAAMNHIGVAMGR 255
           H TLLH       D    +W +W +   V ++  + G  F  S L + AA +  GVA+G 
Sbjct: 188 HHTLLH-------DMSRHDWQAWFRQCGVTDVNVNQGPIFSHSSLVLQAAAHGQGVALGY 240

Query: 256 KRLVQKRLASGELVAPFGDMTVKCHQHYYITTLPGRQWPKIEAFITWL 303
             L +  + +G LV PF ++ V    +Y +      +  KI AF  W+
Sbjct: 241 SVLARPDIKAGRLVVPFQEVLVSKDAYYLVCQQNHAELGKIVAFREWM 288