Pairwise Alignments

Query, 310 a.a., putative inner membrane protein from Escherichia coli BL21

Subject, 279 a.a., transport protein, putative (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  211 bits (536), Expect = 2e-59
 Identities = 113/283 (39%), Positives = 166/283 (58%), Gaps = 7/283 (2%)

Query: 3   NDKIDQHSDEIEVESEEKERGKKIEIDEDRLPSRAMAIHEHIRQDGEKELERDAMALLWS 62
           +D+ D     IE E E++   +        +PSR   + E IRQ G++EL R AMAL +S
Sbjct: 2   SDRTDLAEAAIETEDEQRTVERATA-----MPSRL--VFETIRQSGDEELRRPAMALAFS 54

Query: 63  AIAAGLSMGASLLAKGIFHVELEGVPGSFLLENLGYTFGFIIVIMARQQLFTENTVTAVL 122
            +AAGL +  S+L + +    L   P  ++LEN GY+ GF++VI+ R QLFTENT+T V+
Sbjct: 55  GVAAGLLIAFSVLGEALLRANLPDAPWRYILENFGYSLGFLLVILGRMQLFTENTITTVV 114

Query: 123 PVMQKPTMSNVGLLIRLWGVVLLGNILGTGIAAWAFEYMPIFNEETRDAFVKIGMDVMKN 182
           PV+  PT    G +  LWG+VLL N++G   A       P+ + E  +A +++       
Sbjct: 115 PVLITPTAEMFGKVASLWGIVLLANVVGAFAAGAFLLGAPVLSPEVAEAVMELSRHATGM 174

Query: 183 TPSEMFANAIISGWLIATMVWMFPAAGAAKIVVIILMTWLIALGDTTHIVVGSVEILYLV 242
              E FA  I +G LIA +VWM P A   ++ +I+L TWLIALGD THI+ GSVE+ Y++
Sbjct: 175 GAVEGFARGIPAGVLIAALVWMLPVARGNELALIVLFTWLIALGDFTHIIAGSVEMAYVL 234

Query: 243 FNGTLHWSDFIWPFALPTLAGNICGGTFIFALMSHAQIRNDMS 285
             G L     +  F +P LAGN+ GGT +F +++ AQ R ++S
Sbjct: 235 LAGELGLGQALLGFFVPVLAGNVVGGTVVFTMLAWAQTRAEIS 277