Pairwise Alignments

Query, 672 a.a., poly-beta-1,6-N-acetyl-D-glucosamine (PGA) N-deacetylase outer membrane export lipoprotein from Escherichia coli BL21

Subject, 366 a.a., polysaccharide deacetylase family protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 48.9 bits (115), Expect = 4e-10
 Identities = 48/209 (22%), Positives = 79/209 (37%), Gaps = 36/209 (17%)

Query: 67  MSVRTSALREQFAWLRENGYQPVSIAQIREAHRGGKPLPEKAVVLTFDDGYQSFYTRVFP 126
           ++V      +    +   G++ VS+A+       G PLPE++V++TFDDG+   Y    P
Sbjct: 20  IAVHPDQFEDHCRGMAAEGWRGVSLAEAEAFLAEGTPLPERSVLITFDDGFLDNYVHALP 79

Query: 127 ILQAF-QWPAVWAPVGS--------------W-----------VDTPADKQVKFGDELVD 160
           IL+ +     V+A  G               W           VD P  K     DE  D
Sbjct: 80  ILEKYGHCGTVFATAGKLETAAGLRPTLADVWSGRIPAEGLPRVDAPFVKHRLGFDERHD 139

Query: 161 REYFATWQQVREVARSRLVELASHT-WNSHYGIQANATGSLLPVYVNRAYFTDHA----- 214
              F  W + R    +  + +A+H+ W+      A+  G   P    R +          
Sbjct: 140 --LFLNWDEARHAESTGTLAVAAHSMWHRSVFTSASYEGFYAPQRRGRTFDRVEGDVPWG 197

Query: 215 --RYETAAEYRERIRLDAVKMTEYLRTKV 241
             R++     RER  L + ++   +R  V
Sbjct: 198 LPRFKVGPALRERAFLPSAELLHAIRETV 226



 Score = 30.0 bits (66), Expect = 2e-04
 Identities = 18/63 (28%), Positives = 30/63 (47%)

Query: 215 RYETAAEYRERIRLDAVKMTEYLRTKVEVNPHVFVWPYGEANGIAIEELKKLGYDMFFTL 274
           R+ET AE  ER+  +     + L  ++      F WP+G     A+   ++LG+ +F T 
Sbjct: 260 RFETDAERTERMYREMRDCKQLLENELGHPVTTFCWPWGAFCDEALAIGRELGFRVFLTT 319

Query: 275 ESG 277
             G
Sbjct: 320 LMG 322