Pairwise Alignments

Query, 673 a.a., exision nuclease of nucleotide excision repair, DNA damage recognition component from Escherichia coli BL21

Subject, 674 a.a., excinuclease ABC subunit UvrB from Rhodanobacter denitrificans FW104-10B01

 Score =  897 bits (2318), Expect = 0.0
 Identities = 453/670 (67%), Positives = 542/670 (80%), Gaps = 3/670 (0%)

Query: 1   MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60
           M+  F+L + ++PSGDQP+AI RL EG E GLA QTLLGVTGSGKT+TIANVI  +QRPT
Sbjct: 1   MTDRFELVAPYQPSGDQPQAIARLTEGFEAGLAAQTLLGVTGSGKTYTIANVIERVQRPT 60

Query: 61  MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120
           +V+APNKTLAAQLYGE +EFFP NAVEYFVSYYDYYQPEAYV +SDTFIEKDAS+NEHIE
Sbjct: 61  IVMAPNKTLAAQLYGEFREFFPHNAVEYFVSYYDYYQPEAYVVASDTFIEKDASINEHIE 120

Query: 121 QMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180
           QMRLSATKA+L RRD ++VA+VSAIYGLG+P+ YL + L L  G  IDQR ++ +L ELQ
Sbjct: 121 QMRLSATKALLSRRDSIIVATVSAIYGLGNPEDYLSLRLILAKGERIDQRKLIHQLTELQ 180

Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240
           Y RN+   +RGT+RVRGE+ID+FPAES+  ALR+ELFD EVE ++LFDPLTG+ +  IPR
Sbjct: 181 YTRNEMELRRGTYRVRGEIIDVFPAESETEALRIELFDGEVEDMALFDPLTGETIRKIPR 240

Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300
           +T+YP+THY + RE ++ A+E IK EL  R + L   NKL+E QRL QRT+FDLEMM E+
Sbjct: 241 YTVYPRTHYASTRESVLNAIETIKVELKERLEYLYRENKLVEAQRLEQRTRFDLEMMAEV 300

Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360
           GYC GIENYSR L+ R PGEPPPTLFDYLPADGLLVVDESHVT+PQ+G MY+GDR+RKET
Sbjct: 301 GYCQGIENYSRHLTRRAPGEPPPTLFDYLPADGLLVVDESHVTVPQLGAMYKGDRSRKET 360

Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420
           LVE+GFRLPSA+DNRPL+FEE+EA  P+ IYVSATP +YEL KSG  V + VVRPTGL+D
Sbjct: 361 LVEFGFRLPSAMDNRPLRFEEWEARVPRAIYVSATPRDYELHKSGDAVTELVVRPTGLVD 420

Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480
           P +EVRPV TQVDDLLSE+ +R AI +RVLVTTLTKRMAE+LTEYL EH  +VRYLHSDI
Sbjct: 421 PEVEVRPVRTQVDDLLSEVHKRVAIGDRVLVTTLTKRMAENLTEYLAEHDVKVRYLHSDI 480

Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540
           +TVER EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVA+LDADKEGFLRS  SLIQTIG
Sbjct: 481 ETVERSEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAVLDADKEGFLRSTGSLIQTIG 540

Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600
           RAARNV GKAILY D +T SM  A+GET RRREKQ  +N + GITP  + +++ DI+   
Sbjct: 541 RAARNVRGKAILYADNVTRSMQAAMGETARRREKQVAWNLQQGITPTTIVRRIADIMEGA 600

Query: 601 QNIAKTKAKGRGKSR---PIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657
           ++    +  G+  +R    + E       +S       + +LE  M +HAQNLEFE+AA+
Sbjct: 601 RSEVGNRRGGKSSARGRAAVAEQAADYAGLSAPQAAGLLKKLEAQMYKHAQNLEFEDAAR 660

Query: 658 IRDQLHQLRE 667
           +RDQ+HQLRE
Sbjct: 661 LRDQIHQLRE 670