Pairwise Alignments

Query, 673 a.a., exision nuclease of nucleotide excision repair, DNA damage recognition component from Escherichia coli BL21

Subject, 671 a.a., excinuclease ABC subunit B from Pseudomonas fluorescens FW300-N2C3

 Score =  938 bits (2424), Expect = 0.0
 Identities = 473/669 (70%), Positives = 567/669 (84%), Gaps = 4/669 (0%)

Query: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64
           F+L + F+P+GDQPEAIR + EG+E GLAHQTLLGVTGSGKTF+IANVIA +QRPT+VLA
Sbjct: 4   FQLVTRFQPAGDQPEAIRLMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQVQRPTLVLA 63

Query: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124
           PNKTLAAQLYGE K FFP NAVEYFVSYYDYYQPEAYVPSSDTFIEKDAS+N+HIEQMRL
Sbjct: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184
           SATKA+LER+D ++V +VS IYGLG P+ YLKM+LH+  G  +DQRA+LRRLA+LQY RN
Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQYTRN 183

Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244
           D  F R TFRVRG+VIDI+PAESD  A+R+ELFD+EVE LS FDPLTG+++  +PRFT Y
Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243

Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304
           PK+HYVTPRE ++ A+E IK EL  R + L  NNKL+E QRL QRT+FDLEM+ ELGYC+
Sbjct: 244 PKSHYVTPRETLLDAIEGIKAELQERLEYLRSNNKLVEAQRLEQRTRFDLEMILELGYCN 303

Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364
           GIENYSR+LSGR  G PPPTL+DYLPAD LLV+DESHV++PQ+G MY+GDR+RKETLVEY
Sbjct: 304 GIENYSRYLSGRPAGAPPPTLYDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363

Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424
           GFRLPSALDNRP++F+E+E+++PQTI+VSATPGNYE E + G VV+QVVRPTGL+DP +E
Sbjct: 364 GFRLPSALDNRPMRFDEWESVSPQTIFVSATPGNYEAEHA-GRVVEQVVRPTGLVDPQVE 422

Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484
           VRP  TQVDDLLSEI +R A+ ERVLVTTLTKRMAEDLT+YL +HG RVRYLHSDIDTVE
Sbjct: 423 VRPALTQVDDLLSEISKRVAVEERVLVTTLTKRMAEDLTDYLADHGVRVRYLHSDIDTVE 482

Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544
           R+EIIRDLRLG FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542

Query: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604
           N+NG+AILY D+IT SM +AIGETERRR+KQ  +N  +GITP+G+ K V DI+  G  + 
Sbjct: 543 NLNGRAILYADRITGSMERAIGETERRRDKQIAFNLANGITPKGVFKDVADIME-GATVP 601

Query: 605 KTKAKGR-GKSRPIVEPDNVPMDM-SPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662
            +++K R G ++   E      ++ SP  + ++I +LE  M Q A++LEFE AAQ+RD++
Sbjct: 602 GSRSKKRKGMAKAAEESARYEAELRSPSEITKRIRQLEEKMYQLARDLEFEAAAQLRDEI 661

Query: 663 HQLRELFIA 671
            +LRE  +A
Sbjct: 662 GKLRERLLA 670