Pairwise Alignments

Query, 673 a.a., exision nuclease of nucleotide excision repair, DNA damage recognition component from Escherichia coli BL21

Subject, 669 a.a., excinuclease ABC subunit UvrB from Synechocystis sp000284455 PCC 6803

 Score =  749 bits (1935), Expect = 0.0
 Identities = 376/663 (56%), Positives = 500/663 (75%), Gaps = 6/663 (0%)

Query: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64
           F L++ F+P+GDQP AI  L E L+     QTLLG TG+GKTFT+A+VIA+L RPT+VLA
Sbjct: 6   FSLHAPFRPTGDQPTAIASLIESLQGEHKFQTLLGATGTGKTFTMASVIAELGRPTLVLA 65

Query: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124
            NKTLAAQL  E+++FFPENAVEYF+SYYDYYQPEAY+P +DT+IEK AS+N+ I+ +R 
Sbjct: 66  HNKTLAAQLCNELRQFFPENAVEYFISYYDYYQPEAYIPVTDTYIEKTASINDEIDMLRH 125

Query: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184
           SAT+++ ERRDV+VVAS+S IYGLG P  YLK  + L VG   D R ++R L  +QY+RN
Sbjct: 126 SATRSLFERRDVIVVASISCIYGLGIPSQYLKAAVPLQVGAEYDPRLVIRDLVNVQYSRN 185

Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244
           D   QRG FR++G+V++I PA  D + +R+E F +EVE L L DP++G+I+ ++ R +IY
Sbjct: 186 DVELQRGRFRLKGDVLEIVPAYEDRV-IRIEFFGDEVEALRLIDPVSGEILQSLDRISIY 244

Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304
           P  H+VTP E + +A ++I+ E+  +   L +NN L+E QRL+QRT++DLEM+ E+GYC+
Sbjct: 245 PARHFVTPEETLEKACQQIQTEMEQQVAFLEKNNLLVEAQRLSQRTRYDLEMLREVGYCN 304

Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364
           G+ENYSR+L+ R  GEPP  L DY P D LLV+DESHVTIPQ+ GMY GD+ARK+ L+++
Sbjct: 305 GVENYSRYLADRQAGEPPECLVDYFPEDWLLVIDESHVTIPQLRGMYNGDQARKKVLIDH 364

Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424
           GFRLPSA DNRPLK EEF     Q ++VSATPG +E+E+S   V++QV+RPTG+LDP I 
Sbjct: 365 GFRLPSAADNRPLKAEEFWQKVKQCVFVSATPGVWEIEQSEARVIEQVIRPTGVLDPEIF 424

Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484
           VRP   QVDDL  EI+ R  + ERVL+TTLTKRMAEDLT+Y  E G +V+YLHS+I +++
Sbjct: 425 VRPTTGQVDDLYGEIQTRVKLKERVLITTLTKRMAEDLTDYFSERGIKVQYLHSEIQSIQ 484

Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544
           R+EI++ LR GEFDVL+G+NLLREGLD+PEVSLVAI+DADKEGFLR+ERSLIQTIGRAAR
Sbjct: 485 RIEILQALRDGEFDVLIGVNLLREGLDLPEVSLVAIMDADKEGFLRAERSLIQTIGRAAR 544

Query: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604
           ++ G+AILY D  T SM KAI ETERRR+ QQ+YNE+HGITPQ +NK+  + +    +I+
Sbjct: 545 HIRGQAILYADNFTDSMQKAIAETERRRKIQQEYNEKHGITPQPINKRANNAILQFLDIS 604

Query: 605 KTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQ 664
           +     R  S+ + E      D+  + +   I +LE  M + A+  EFE AA  RD++  
Sbjct: 605 R-----RLNSQQLEEVYEQAQDLPLEKIPDLIQQLEEKMQEAAKKQEFEVAAIYRDRIQH 659

Query: 665 LRE 667
           LR+
Sbjct: 660 LRD 662