Pairwise Alignments

Query, 673 a.a., exision nuclease of nucleotide excision repair, DNA damage recognition component from Escherichia coli BL21

Subject, 672 a.a., excinuclease ABC subunit B (RefSeq) from Shewanella loihica PV-4

 Score =  970 bits (2507), Expect = 0.0
 Identities = 489/668 (73%), Positives = 568/668 (85%), Gaps = 1/668 (0%)

Query: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64
           F L S + P+GDQP AI++L +GL+ GLA+QTLLGVTGSGKTFTIANVI  +QRPT+++A
Sbjct: 6   FDLVSQYAPAGDQPGAIKQLVDGLDAGLANQTLLGVTGSGKTFTIANVIKQMQRPTIIMA 65

Query: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124
           PNKTLAAQLYGEMKEFFP NAVEYFVSYYDYYQPEAYVPS++TFIEKDASVN HIEQMRL
Sbjct: 66  PNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSTNTFIEKDASVNAHIEQMRL 125

Query: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184
           SATKA+LERRDVV++ASVSAIYGLGDP+ Y+KM+LHL  G  + QR IL+RL+ELQY RN
Sbjct: 126 SATKALLERRDVVLIASVSAIYGLGDPESYMKMLLHLRQGDFMGQREILQRLSELQYTRN 185

Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244
           D    RGTFRVRGEVIDIFPAESD  A+RVELFD+E++RLSLFDPLTG I+  I R T+Y
Sbjct: 186 DIELDRGTFRVRGEVIDIFPAESDKQAIRVELFDDEIDRLSLFDPLTGHILQRIARTTVY 245

Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304
           PKTHYVTPRE+I+ A E+IK+EL  R++ LL+NNKL+E QR+++R Q+D+EMM ELGYCS
Sbjct: 246 PKTHYVTPREKILAATEDIKQELRERKQYLLDNNKLIEAQRISERVQYDIEMMTELGYCS 305

Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364
           GIENYSR+LSGR PGE PPTL DYLPADGLL++DESHVT+PQIG MY+GDR+RK  LVEY
Sbjct: 306 GIENYSRYLSGRRPGEGPPTLLDYLPADGLLILDESHVTVPQIGAMYKGDRSRKMNLVEY 365

Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424
           GFRLPSALDNRPLKFEEFE+L PQTI+VSATP  YEL+KS G++ +QVVRPTGLLDP IE
Sbjct: 366 GFRLPSALDNRPLKFEEFESLMPQTIFVSATPAQYELDKSDGEIAEQVVRPTGLLDPEIE 425

Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484
           VRPVA QVDDLLSE  +R A+NERVLVTTLTKRMAEDLTEYL+EHG +VRYLHSDIDTVE
Sbjct: 426 VRPVAIQVDDLLSEANKRVAVNERVLVTTLTKRMAEDLTEYLDEHGVKVRYLHSDIDTVE 485

Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544
           R+EIIRDLRLG FDVLVGINLLREGLDMPEVSLV ILDADKEGFLRSERSLIQTIGRAAR
Sbjct: 486 RVEIIRDLRLGVFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRAAR 545

Query: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604
           NVNGK ILY D +T SMAKAIGETERRREKQ+++N  +GITP+G++KK+ D++ LG    
Sbjct: 546 NVNGKVILYADNMTKSMAKAIGETERRREKQREFNLANGITPKGVSKKIADVMDLGDYNE 605

Query: 605 KTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQ 664
            T AK   K + + E           +L  +I ELE  M QHA++LEFE+AA +RD++  
Sbjct: 606 HT-AKVLPKYQKVAESRTTYAKQDASSLSHQIDELEKRMHQHARDLEFEQAAALRDEVLA 664

Query: 665 LRELFIAA 672
           LRE  I A
Sbjct: 665 LREALIKA 672